Experiment: m.b. acetate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00140 and PGA1_c00150 are separated by 113 nucleotides PGA1_c00150 and PGA1_c00160 are separated by 146 nucleotides PGA1_c00160 and PGA1_c00170 are separated by 249 nucleotides PGA1_c00170 and PGA1_c00180 are separated by 46 nucleotides PGA1_c00180 and PGA1_c00190 are separated by 19 nucleotides
PGA1_c00140: PGA1_c00140 - 23S ribosomal RNA, at 15,383 to 18,208
_c00140
PGA1_c00150: PGA1_c00150 - 5S ribosomal RNA, at 18,322 to 18,435
_c00150
PGA1_c00160: PGA1_c00160 - tRNA-Met, at 18,582 to 18,658
_c00160
PGA1_c00170: PGA1_c00170 - hypothetical protein, at 18,908 to 19,213
_c00170
PGA1_c00180: PGA1_c00180 - lysE type translocator-like protein, at 19,260 to 19,904
_c00180
PGA1_c00190: PGA1_c00190 - lysE type translocator-like protein, at 19,924 to 20,565
_c00190
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.747 kb on + strand at 18.781 kb on + strand at 18.784 kb on + strand at 18.789 kb on - strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.829 kb on + strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.837 kb on - strand at 18.842 kb on - strand at 18.842 kb on - strand at 18.852 kb on - strand at 18.855 kb on - strand at 18.866 kb on - strand at 18.894 kb on + strand at 18.894 kb on + strand at 18.894 kb on + strand at 18.902 kb on - strand at 18.902 kb on - strand at 18.902 kb on - strand at 18.902 kb on - strand at 18.924 kb on + strand at 18.929 kb on + strand at 18.932 kb on - strand at 18.932 kb on - strand at 18.937 kb on - strand at 18.955 kb on - strand, within PGA1_c00170 at 18.955 kb on - strand, within PGA1_c00170 at 18.962 kb on + strand, within PGA1_c00170 at 18.970 kb on - strand, within PGA1_c00170 at 18.997 kb on + strand, within PGA1_c00170 at 18.997 kb on + strand, within PGA1_c00170 at 18.997 kb on + strand, within PGA1_c00170 at 18.997 kb on + strand, within PGA1_c00170 at 19.008 kb on + strand, within PGA1_c00170 at 19.051 kb on - strand, within PGA1_c00170 at 19.099 kb on + strand, within PGA1_c00170 at 19.099 kb on + strand, within PGA1_c00170 at 19.163 kb on - strand, within PGA1_c00170 at 19.185 kb on + strand at 19.206 kb on + strand at 19.218 kb on + strand at 19.286 kb on - strand at 19.331 kb on + strand, within PGA1_c00180 at 19.346 kb on + strand, within PGA1_c00180 at 19.346 kb on + strand, within PGA1_c00180 at 19.346 kb on + strand, within PGA1_c00180 at 19.349 kb on + strand, within PGA1_c00180 at 19.349 kb on - strand, within PGA1_c00180 at 19.354 kb on - strand, within PGA1_c00180 at 19.354 kb on - strand, within PGA1_c00180 at 19.359 kb on + strand, within PGA1_c00180 at 19.359 kb on + strand, within PGA1_c00180 at 19.367 kb on - strand, within PGA1_c00180 at 19.367 kb on - strand, within PGA1_c00180 at 19.367 kb on - strand, within PGA1_c00180 at 19.374 kb on - strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.376 kb on + strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.384 kb on - strand, within PGA1_c00180 at 19.393 kb on + strand, within PGA1_c00180 at 19.397 kb on - strand, within PGA1_c00180 at 19.412 kb on + strand, within PGA1_c00180 at 19.423 kb on + strand, within PGA1_c00180 at 19.426 kb on + strand, within PGA1_c00180 at 19.434 kb on - strand, within PGA1_c00180 at 19.436 kb on - strand, within PGA1_c00180 at 19.441 kb on - strand, within PGA1_c00180 at 19.454 kb on - strand, within PGA1_c00180 at 19.454 kb on - strand, within PGA1_c00180 at 19.454 kb on - strand, within PGA1_c00180 at 19.455 kb on - strand, within PGA1_c00180 at 19.459 kb on + strand, within PGA1_c00180 at 19.485 kb on + strand, within PGA1_c00180 at 19.517 kb on + strand, within PGA1_c00180 at 19.517 kb on + strand, within PGA1_c00180 at 19.523 kb on + strand, within PGA1_c00180 at 19.523 kb on + strand, within PGA1_c00180 at 19.525 kb on - strand, within PGA1_c00180 at 19.525 kb on - strand, within PGA1_c00180 at 19.525 kb on - strand, within PGA1_c00180 at 19.536 kb on - strand, within PGA1_c00180 at 19.536 kb on - strand, within PGA1_c00180 at 19.536 kb on - strand, within PGA1_c00180 at 19.552 kb on + strand, within PGA1_c00180 at 19.619 kb on + strand, within PGA1_c00180 at 19.621 kb on + strand, within PGA1_c00180 at 19.627 kb on + strand, within PGA1_c00180 at 19.627 kb on - strand, within PGA1_c00180 at 19.699 kb on + strand, within PGA1_c00180 at 19.704 kb on + strand, within PGA1_c00180 at 19.704 kb on + strand, within PGA1_c00180 at 19.704 kb on + strand, within PGA1_c00180 at 19.707 kb on - strand, within PGA1_c00180 at 19.712 kb on - strand, within PGA1_c00180 at 19.741 kb on + strand, within PGA1_c00180 at 19.747 kb on + strand, within PGA1_c00180 at 19.779 kb on + strand, within PGA1_c00180 at 19.779 kb on + strand, within PGA1_c00180 at 19.787 kb on - strand, within PGA1_c00180 at 19.789 kb on + strand, within PGA1_c00180 at 19.825 kb on - strand, within PGA1_c00180 at 19.825 kb on - strand, within PGA1_c00180 at 19.834 kb on + strand, within PGA1_c00180 at 19.834 kb on + strand, within PGA1_c00180 at 19.842 kb on - strand at 19.842 kb on - strand at 19.855 kb on - strand at 19.855 kb on - strand at 19.855 kb on - strand at 19.855 kb on - strand at 19.855 kb on - strand at 19.860 kb on + strand at 19.860 kb on - strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.920 kb on + strand at 19.923 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.925 kb on - strand at 19.926 kb on + strand at 19.927 kb on + strand at 19.928 kb on - strand at 19.928 kb on - strand at 19.928 kb on - strand at 19.935 kb on - strand at 19.936 kb on + strand at 19.936 kb on + strand at 19.952 kb on - strand at 19.984 kb on - strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.994 kb on - strand, within PGA1_c00190 at 19.994 kb on - strand, within PGA1_c00190 at 19.994 kb on - strand, within PGA1_c00190 at 19.994 kb on - strand, within PGA1_c00190 at 20.004 kb on - strand, within PGA1_c00190 at 20.019 kb on - strand, within PGA1_c00190 at 20.020 kb on + strand, within PGA1_c00190 at 20.038 kb on + strand, within PGA1_c00190 at 20.045 kb on + strand, within PGA1_c00190 at 20.046 kb on - strand, within PGA1_c00190 at 20.053 kb on - strand, within PGA1_c00190 at 20.053 kb on - strand, within PGA1_c00190 at 20.066 kb on + strand, within PGA1_c00190 at 20.110 kb on + strand, within PGA1_c00190 at 20.113 kb on - strand, within PGA1_c00190 at 20.113 kb on - strand, within PGA1_c00190 at 20.122 kb on + strand, within PGA1_c00190 at 20.122 kb on + strand, within PGA1_c00190 at 20.130 kb on + strand, within PGA1_c00190 at 20.130 kb on + strand, within PGA1_c00190 at 20.130 kb on + strand, within PGA1_c00190 at 20.130 kb on - strand, within PGA1_c00190 at 20.130 kb on - strand, within PGA1_c00190 at 20.138 kb on - strand, within PGA1_c00190 at 20.138 kb on - strand, within PGA1_c00190 at 20.150 kb on + strand, within PGA1_c00190 at 20.150 kb on + strand, within PGA1_c00190 at 20.163 kb on - strand, within PGA1_c00190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 100 mM remove 18,747 + -0.2 18,781 + +0.1 18,784 + -0.9 18,789 - +0.4 18,829 + +0.2 18,829 + -0.4 18,829 + -0.4 18,829 + -1.8 18,829 + -0.5 18,829 + +0.5 18,829 + +0.3 18,829 + +0.0 18,829 + +0.2 18,829 + -0.0 18,829 + +0.1 18,829 + -0.6 18,829 + +0.9 18,829 + -0.9 18,829 + +0.6 18,829 + +0.3 18,829 + -0.7 18,829 + -2.0 18,829 + -0.7 18,829 + -0.4 18,829 + +0.2 18,829 + +0.1 18,837 - +0.6 18,837 - +0.9 18,837 - +0.9 18,837 - +0.4 18,837 - -0.0 18,837 - +1.0 18,837 - -0.1 18,837 - -0.1 18,837 - +1.2 18,837 - +0.9 18,837 - -1.7 18,837 - +0.0 18,837 - +1.2 18,837 - -2.2 18,837 - +3.1 18,837 - +0.5 18,837 - +1.2 18,837 - +0.9 18,837 - +1.3 18,837 - -2.2 18,837 - +1.6 18,837 - -0.8 18,837 - -1.5 18,837 - +0.7 18,842 - +0.9 18,842 - +0.1 18,852 - -1.5 18,855 - -0.2 18,866 - -0.4 18,894 + +0.0 18,894 + -0.2 18,894 + +1.1 18,902 - -0.9 18,902 - -0.9 18,902 - -1.0 18,902 - -0.2 18,924 + -1.3 18,929 + +1.3 18,932 - +0.5 18,932 - -1.4 18,937 - -0.1 18,955 - PGA1_c00170 0.15 -0.4 18,955 - PGA1_c00170 0.15 -0.8 18,962 + PGA1_c00170 0.18 +2.8 18,970 - PGA1_c00170 0.20 -1.4 18,997 + PGA1_c00170 0.29 -1.9 18,997 + PGA1_c00170 0.29 -0.2 18,997 + PGA1_c00170 0.29 -0.1 18,997 + PGA1_c00170 0.29 -1.0 19,008 + PGA1_c00170 0.33 -1.2 19,051 - PGA1_c00170 0.47 -1.0 19,099 + PGA1_c00170 0.62 -0.0 19,099 + PGA1_c00170 0.62 +0.3 19,163 - PGA1_c00170 0.83 -0.2 19,185 + -0.5 19,206 + -0.5 19,218 + +0.2 19,286 - +1.0 19,331 + PGA1_c00180 0.11 +0.1 19,346 + PGA1_c00180 0.13 -1.7 19,346 + PGA1_c00180 0.13 -1.5 19,346 + PGA1_c00180 0.13 +0.4 19,349 + PGA1_c00180 0.14 -0.8 19,349 - PGA1_c00180 0.14 +1.2 19,354 - PGA1_c00180 0.15 +0.7 19,354 - PGA1_c00180 0.15 -1.4 19,359 + PGA1_c00180 0.15 -0.2 19,359 + PGA1_c00180 0.15 +0.3 19,367 - PGA1_c00180 0.17 +0.2 19,367 - PGA1_c00180 0.17 -0.7 19,367 - PGA1_c00180 0.17 +0.0 19,374 - PGA1_c00180 0.18 +1.6 19,376 + PGA1_c00180 0.18 +0.2 19,376 + PGA1_c00180 0.18 -0.9 19,376 + PGA1_c00180 0.18 -0.2 19,376 + PGA1_c00180 0.18 -2.0 19,376 + PGA1_c00180 0.18 -0.1 19,376 + PGA1_c00180 0.18 -0.7 19,376 + PGA1_c00180 0.18 -0.4 19,376 + PGA1_c00180 0.18 +1.3 19,376 + PGA1_c00180 0.18 -0.9 19,376 + PGA1_c00180 0.18 -0.6 19,376 + PGA1_c00180 0.18 -2.3 19,376 + PGA1_c00180 0.18 +0.8 19,376 + PGA1_c00180 0.18 +0.2 19,376 + PGA1_c00180 0.18 -1.9 19,376 + PGA1_c00180 0.18 +1.1 19,376 + PGA1_c00180 0.18 -1.9 19,376 + PGA1_c00180 0.18 -0.1 19,376 + PGA1_c00180 0.18 -0.5 19,376 + PGA1_c00180 0.18 +0.5 19,376 + PGA1_c00180 0.18 +0.5 19,376 + PGA1_c00180 0.18 +0.1 19,376 + PGA1_c00180 0.18 -0.8 19,376 + PGA1_c00180 0.18 -0.6 19,376 + PGA1_c00180 0.18 +0.6 19,376 + PGA1_c00180 0.18 +0.2 19,376 + PGA1_c00180 0.18 +0.9 19,376 + PGA1_c00180 0.18 -0.4 19,376 + PGA1_c00180 0.18 +0.9 19,376 + PGA1_c00180 0.18 -0.2 19,376 + PGA1_c00180 0.18 -0.2 19,384 - PGA1_c00180 0.19 -0.4 19,384 - PGA1_c00180 0.19 +1.1 19,384 - PGA1_c00180 0.19 +0.8 19,384 - PGA1_c00180 0.19 -0.1 19,384 - PGA1_c00180 0.19 +0.1 19,384 - PGA1_c00180 0.19 +0.2 19,384 - PGA1_c00180 0.19 +0.1 19,384 - PGA1_c00180 0.19 +0.2 19,384 - PGA1_c00180 0.19 -0.1 19,384 - PGA1_c00180 0.19 -0.3 19,384 - PGA1_c00180 0.19 +0.4 19,384 - PGA1_c00180 0.19 +0.7 19,384 - PGA1_c00180 0.19 -0.4 19,384 - PGA1_c00180 0.19 -0.8 19,384 - PGA1_c00180 0.19 +0.8 19,384 - PGA1_c00180 0.19 -0.9 19,384 - PGA1_c00180 0.19 -0.1 19,384 - PGA1_c00180 0.19 -1.0 19,384 - PGA1_c00180 0.19 -0.5 19,384 - PGA1_c00180 0.19 -2.8 19,393 + PGA1_c00180 0.21 -0.3 19,397 - PGA1_c00180 0.21 +0.2 19,412 + PGA1_c00180 0.24 +0.2 19,423 + PGA1_c00180 0.25 -0.2 19,426 + PGA1_c00180 0.26 -1.8 19,434 - PGA1_c00180 0.27 +0.4 19,436 - PGA1_c00180 0.27 +1.8 19,441 - PGA1_c00180 0.28 +0.5 19,454 - PGA1_c00180 0.30 -0.4 19,454 - PGA1_c00180 0.30 -0.3 19,454 - PGA1_c00180 0.30 +0.5 19,455 - PGA1_c00180 0.30 +1.2 19,459 + PGA1_c00180 0.31 +0.6 19,485 + PGA1_c00180 0.35 +1.4 19,517 + PGA1_c00180 0.40 -0.4 19,517 + PGA1_c00180 0.40 +2.1 19,523 + PGA1_c00180 0.41 +0.8 19,523 + PGA1_c00180 0.41 -1.0 19,525 - PGA1_c00180 0.41 +2.1 19,525 - PGA1_c00180 0.41 +0.0 19,525 - PGA1_c00180 0.41 +0.1 19,536 - PGA1_c00180 0.43 +0.2 19,536 - PGA1_c00180 0.43 +1.6 19,536 - PGA1_c00180 0.43 -0.6 19,552 + PGA1_c00180 0.45 +0.8 19,619 + PGA1_c00180 0.56 -0.0 19,621 + PGA1_c00180 0.56 +1.2 19,627 + PGA1_c00180 0.57 -0.1 19,627 - PGA1_c00180 0.57 -0.8 19,699 + PGA1_c00180 0.68 -0.1 19,704 + PGA1_c00180 0.69 -0.6 19,704 + PGA1_c00180 0.69 -1.1 19,704 + PGA1_c00180 0.69 +0.2 19,707 - PGA1_c00180 0.69 -0.6 19,712 - PGA1_c00180 0.70 +0.0 19,741 + PGA1_c00180 0.75 +1.2 19,747 + PGA1_c00180 0.76 +0.1 19,779 + PGA1_c00180 0.80 -1.6 19,779 + PGA1_c00180 0.80 +0.6 19,787 - PGA1_c00180 0.82 +0.8 19,789 + PGA1_c00180 0.82 -0.7 19,825 - PGA1_c00180 0.88 -1.0 19,825 - PGA1_c00180 0.88 +0.0 19,834 + PGA1_c00180 0.89 -1.9 19,834 + PGA1_c00180 0.89 +0.2 19,842 - -1.5 19,842 - -0.7 19,855 - -0.4 19,855 - -0.9 19,855 - +2.2 19,855 - -1.7 19,855 - +1.4 19,860 + -0.7 19,860 - +1.1 19,917 + -0.8 19,917 + -1.1 19,917 + -0.3 19,917 + +0.9 19,917 + +0.2 19,920 + +0.2 19,923 - +0.4 19,925 - -1.3 19,925 - -0.1 19,925 - +1.2 19,925 - +1.0 19,925 - +0.6 19,925 - +0.3 19,925 - -1.6 19,925 - +0.0 19,925 - -1.1 19,925 - -0.2 19,925 - +0.4 19,926 + -0.5 19,927 + +1.0 19,928 - +0.2 19,928 - +0.3 19,928 - -0.3 19,935 - -1.4 19,936 + -0.8 19,936 + -0.8 19,952 - -0.4 19,984 - +2.1 19,986 + -1.5 19,986 + -0.6 19,986 + -0.3 19,986 + +1.2 19,994 - PGA1_c00190 0.11 -2.2 19,994 - PGA1_c00190 0.11 -2.1 19,994 - PGA1_c00190 0.11 +0.2 19,994 - PGA1_c00190 0.11 -1.2 20,004 - PGA1_c00190 0.12 -0.4 20,019 - PGA1_c00190 0.15 -0.3 20,020 + PGA1_c00190 0.15 -0.9 20,038 + PGA1_c00190 0.18 +0.4 20,045 + PGA1_c00190 0.19 -0.9 20,046 - PGA1_c00190 0.19 +0.0 20,053 - PGA1_c00190 0.20 +0.7 20,053 - PGA1_c00190 0.20 +0.2 20,066 + PGA1_c00190 0.22 +0.2 20,110 + PGA1_c00190 0.29 -0.6 20,113 - PGA1_c00190 0.29 -1.2 20,113 - PGA1_c00190 0.29 +0.7 20,122 + PGA1_c00190 0.31 -0.7 20,122 + PGA1_c00190 0.31 +0.3 20,130 + PGA1_c00190 0.32 -0.0 20,130 + PGA1_c00190 0.32 -1.6 20,130 + PGA1_c00190 0.32 -0.1 20,130 - PGA1_c00190 0.32 -0.7 20,130 - PGA1_c00190 0.32 +0.4 20,138 - PGA1_c00190 0.33 +0.5 20,138 - PGA1_c00190 0.33 +0.1 20,150 + PGA1_c00190 0.35 -0.3 20,150 + PGA1_c00190 0.35 -0.8 20,163 - PGA1_c00190 0.37 -0.8
Or see this region's nucleotide sequence