Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15290

Experiment: m.b. acetate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15270 and PGA1_c15280 are separated by 94 nucleotidesPGA1_c15280 and PGA1_c15290 are separated by 80 nucleotidesPGA1_c15290 and PGA1_c15300 are separated by 116 nucleotides PGA1_c15270: PGA1_c15270 - alanyl-tRNA synthetase AlaS, at 1,590,587 to 1,593,238 _c15270 PGA1_c15280: PGA1_c15280 - Uncharacterized conserved protein, at 1,593,333 to 1,593,620 _c15280 PGA1_c15290: PGA1_c15290 - Lactoylglutathione lyase and related lyases, at 1,593,701 to 1,594,282 _c15290 PGA1_c15300: PGA1_c15300 - GTP-binding protein TypA, at 1,594,399 to 1,596,219 _c15300 Position (kb) 1593 1594 1595Strain fitness (log2 ratio) -1 0 1 2at 1593.238 kb on + strandat 1593.314 kb on + strandat 1593.519 kb on - strand, within PGA1_c15280at 1593.558 kb on + strand, within PGA1_c15280at 1593.558 kb on + strand, within PGA1_c15280at 1593.566 kb on - strand, within PGA1_c15280at 1593.573 kb on - strand, within PGA1_c15280at 1593.588 kb on - strand, within PGA1_c15280at 1593.641 kb on + strandat 1593.649 kb on - strandat 1593.718 kb on - strandat 1593.718 kb on - strandat 1593.718 kb on - strandat 1593.732 kb on + strandat 1593.788 kb on + strand, within PGA1_c15290at 1593.836 kb on + strand, within PGA1_c15290at 1594.036 kb on - strand, within PGA1_c15290at 1594.085 kb on + strand, within PGA1_c15290at 1594.238 kb on + strandat 1594.267 kb on + strandat 1594.268 kb on - strandat 1594.275 kb on - strandat 1594.286 kb on + strandat 1594.318 kb on + strandat 1594.318 kb on + strandat 1594.326 kb on - strandat 1594.326 kb on - strandat 1594.416 kb on - strandat 1594.437 kb on + strandat 1594.709 kb on - strand, within PGA1_c15300at 1594.724 kb on - strand, within PGA1_c15300at 1594.777 kb on + strand, within PGA1_c15300at 1594.824 kb on - strand, within PGA1_c15300at 1594.903 kb on + strand, within PGA1_c15300at 1594.922 kb on + strand, within PGA1_c15300at 1594.943 kb on + strand, within PGA1_c15300at 1594.943 kb on + strand, within PGA1_c15300at 1594.951 kb on - strand, within PGA1_c15300at 1595.233 kb on + strand, within PGA1_c15300at 1595.241 kb on - strand, within PGA1_c15300

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 100 mM
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1,593,238 + +1.2
1,593,314 + -0.4
1,593,519 - PGA1_c15280 0.65 -1.4
1,593,558 + PGA1_c15280 0.78 -1.2
1,593,558 + PGA1_c15280 0.78 -0.6
1,593,566 - PGA1_c15280 0.81 +0.7
1,593,573 - PGA1_c15280 0.83 +0.3
1,593,588 - PGA1_c15280 0.89 +1.2
1,593,641 + -0.7
1,593,649 - -1.0
1,593,718 - +0.1
1,593,718 - +1.5
1,593,718 - +0.4
1,593,732 + -0.7
1,593,788 + PGA1_c15290 0.15 +0.5
1,593,836 + PGA1_c15290 0.23 -0.7
1,594,036 - PGA1_c15290 0.58 -1.4
1,594,085 + PGA1_c15290 0.66 +1.8
1,594,238 + -0.8
1,594,267 + +0.1
1,594,268 - +0.8
1,594,275 - +0.6
1,594,286 + +1.1
1,594,318 + -0.3
1,594,318 + +0.4
1,594,326 - +0.6
1,594,326 - +1.6
1,594,416 - -0.1
1,594,437 + -0.7
1,594,709 - PGA1_c15300 0.17 +0.5
1,594,724 - PGA1_c15300 0.18 -1.3
1,594,777 + PGA1_c15300 0.21 +0.5
1,594,824 - PGA1_c15300 0.23 -0.8
1,594,903 + PGA1_c15300 0.28 +0.6
1,594,922 + PGA1_c15300 0.29 -1.5
1,594,943 + PGA1_c15300 0.30 -0.7
1,594,943 + PGA1_c15300 0.30 -0.4
1,594,951 - PGA1_c15300 0.30 -0.7
1,595,233 + PGA1_c15300 0.46 +0.3
1,595,241 - PGA1_c15300 0.46 +0.0

Or see this region's nucleotide sequence