Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20635

Experiment: MRS Time48hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11695 and BBR_RS20635 are separated by 303 nucleotidesBBR_RS20635 and BBR_RS11700 are separated by 347 nucleotidesBBR_RS11700 and BBR_RS11705 are separated by 3 nucleotides BBR_RS11695: BBR_RS11695 - hypothetical protein, at 378,166 to 379,128 _RS11695 BBR_RS20635: BBR_RS20635 - hypothetical protein, at 379,432 to 379,635 _RS20635 BBR_RS11700: BBR_RS11700 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C, at 379,983 to 380,282 _RS11700 BBR_RS11705: BBR_RS11705 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA, at 380,286 to 381,827 _RS11705 Position (kb) 379 380Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 378.455 kb on + strand, within BBR_RS11695at 378.483 kb on + strand, within BBR_RS11695at 378.568 kb on + strand, within BBR_RS11695at 378.568 kb on + strand, within BBR_RS11695at 378.568 kb on + strand, within BBR_RS11695at 378.576 kb on - strand, within BBR_RS11695at 378.589 kb on + strand, within BBR_RS11695at 378.589 kb on + strand, within BBR_RS11695at 378.589 kb on + strand, within BBR_RS11695at 378.589 kb on + strand, within BBR_RS11695at 378.591 kb on + strand, within BBR_RS11695at 378.597 kb on - strand, within BBR_RS11695at 378.599 kb on - strand, within BBR_RS11695at 378.625 kb on + strand, within BBR_RS11695at 378.625 kb on + strand, within BBR_RS11695at 378.625 kb on + strand, within BBR_RS11695at 378.632 kb on + strand, within BBR_RS11695at 378.632 kb on - strand, within BBR_RS11695at 378.640 kb on - strand, within BBR_RS11695at 378.680 kb on + strand, within BBR_RS11695at 378.685 kb on - strand, within BBR_RS11695at 378.689 kb on + strand, within BBR_RS11695at 378.694 kb on + strand, within BBR_RS11695at 378.694 kb on + strand, within BBR_RS11695at 378.694 kb on + strand, within BBR_RS11695at 378.694 kb on + strand, within BBR_RS11695at 378.694 kb on + strand, within BBR_RS11695at 378.694 kb on + strand, within BBR_RS11695at 378.694 kb on + strand, within BBR_RS11695at 378.694 kb on + strand, within BBR_RS11695at 378.696 kb on + strand, within BBR_RS11695at 378.702 kb on - strand, within BBR_RS11695at 378.702 kb on - strand, within BBR_RS11695at 378.702 kb on - strand, within BBR_RS11695at 378.702 kb on - strand, within BBR_RS11695at 378.702 kb on - strand, within BBR_RS11695at 378.713 kb on + strand, within BBR_RS11695at 378.749 kb on + strand, within BBR_RS11695at 378.749 kb on + strand, within BBR_RS11695at 378.792 kb on + strand, within BBR_RS11695at 378.792 kb on + strand, within BBR_RS11695at 378.792 kb on + strand, within BBR_RS11695at 378.800 kb on - strand, within BBR_RS11695at 378.802 kb on - strand, within BBR_RS11695at 378.842 kb on + strand, within BBR_RS11695at 378.850 kb on - strand, within BBR_RS11695at 378.850 kb on - strand, within BBR_RS11695at 378.852 kb on + strand, within BBR_RS11695at 378.860 kb on - strand, within BBR_RS11695at 378.870 kb on + strand, within BBR_RS11695at 378.907 kb on + strand, within BBR_RS11695at 378.912 kb on + strand, within BBR_RS11695at 378.918 kb on - strand, within BBR_RS11695at 378.920 kb on + strand, within BBR_RS11695at 378.928 kb on - strand, within BBR_RS11695at 378.928 kb on - strand, within BBR_RS11695at 378.945 kb on + strand, within BBR_RS11695at 378.980 kb on + strand, within BBR_RS11695at 378.987 kb on - strand, within BBR_RS11695at 379.043 kb on - strandat 379.043 kb on - strandat 379.045 kb on + strandat 379.060 kb on + strandat 379.068 kb on - strandat 379.158 kb on + strandat 379.160 kb on + strandat 379.168 kb on - strandat 379.181 kb on + strandat 379.204 kb on + strandat 379.211 kb on + strandat 379.211 kb on + strandat 379.212 kb on - strandat 379.231 kb on + strandat 379.248 kb on + strandat 379.292 kb on + strandat 379.309 kb on + strandat 379.331 kb on + strandat 379.341 kb on + strandat 379.350 kb on + strandat 379.359 kb on - strandat 379.408 kb on - strandat 379.410 kb on - strandat 379.418 kb on - strandat 379.419 kb on + strandat 379.425 kb on + strandat 379.425 kb on + strandat 379.425 kb on + strandat 379.430 kb on + strandat 379.452 kb on + strandat 379.460 kb on + strand, within BBR_RS20635at 379.460 kb on + strand, within BBR_RS20635at 379.460 kb on + strand, within BBR_RS20635at 379.460 kb on + strand, within BBR_RS20635at 379.460 kb on + strand, within BBR_RS20635at 379.473 kb on - strand, within BBR_RS20635at 379.534 kb on - strand, within BBR_RS20635at 379.568 kb on - strand, within BBR_RS20635at 379.597 kb on + strand, within BBR_RS20635at 379.597 kb on + strand, within BBR_RS20635at 379.597 kb on + strand, within BBR_RS20635at 379.605 kb on - strand, within BBR_RS20635at 379.605 kb on - strand, within BBR_RS20635at 379.605 kb on - strand, within BBR_RS20635at 379.605 kb on - strand, within BBR_RS20635at 379.615 kb on - strandat 379.625 kb on + strandat 379.628 kb on + strandat 379.638 kb on - strandat 379.638 kb on - strandat 379.641 kb on + strandat 379.658 kb on + strandat 379.659 kb on + strandat 379.666 kb on + strandat 379.674 kb on - strandat 379.678 kb on + strandat 379.683 kb on + strandat 379.683 kb on + strandat 379.683 kb on + strandat 379.691 kb on - strandat 379.691 kb on - strandat 379.691 kb on - strandat 379.691 kb on - strandat 379.691 kb on - strandat 379.769 kb on - strandat 379.769 kb on - strandat 379.777 kb on - strandat 379.813 kb on + strandat 379.813 kb on + strandat 379.813 kb on + strandat 379.813 kb on + strandat 379.813 kb on + strandat 379.821 kb on - strandat 379.821 kb on - strandat 379.821 kb on - strandat 379.844 kb on - strandat 379.863 kb on - strandat 379.865 kb on + strandat 379.886 kb on + strandat 379.886 kb on + strandat 379.894 kb on - strandat 379.895 kb on + strandat 379.895 kb on + strandat 379.901 kb on + strandat 379.901 kb on + strandat 379.922 kb on - strandat 379.922 kb on - strandat 379.979 kb on + strandat 379.979 kb on + strandat 380.264 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MRS Time48hr
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378,455 + BBR_RS11695 0.30 -1.4
378,483 + BBR_RS11695 0.33 -0.5
378,568 + BBR_RS11695 0.42 -0.8
378,568 + BBR_RS11695 0.42 -0.8
378,568 + BBR_RS11695 0.42 -2.8
378,576 - BBR_RS11695 0.43 +1.2
378,589 + BBR_RS11695 0.44 -1.5
378,589 + BBR_RS11695 0.44 +1.7
378,589 + BBR_RS11695 0.44 -0.8
378,589 + BBR_RS11695 0.44 +1.2
378,591 + BBR_RS11695 0.44 +2.6
378,597 - BBR_RS11695 0.45 -0.4
378,599 - BBR_RS11695 0.45 +0.7
378,625 + BBR_RS11695 0.48 +0.9
378,625 + BBR_RS11695 0.48 +1.6
378,625 + BBR_RS11695 0.48 -1.4
378,632 + BBR_RS11695 0.48 +0.9
378,632 - BBR_RS11695 0.48 -1.2
378,640 - BBR_RS11695 0.49 -0.4
378,680 + BBR_RS11695 0.53 +2.0
378,685 - BBR_RS11695 0.54 -1.6
378,689 + BBR_RS11695 0.54 -2.6
378,694 + BBR_RS11695 0.55 -0.1
378,694 + BBR_RS11695 0.55 -1.8
378,694 + BBR_RS11695 0.55 +2.1
378,694 + BBR_RS11695 0.55 +0.2
378,694 + BBR_RS11695 0.55 -0.8
378,694 + BBR_RS11695 0.55 +0.5
378,694 + BBR_RS11695 0.55 +2.1
378,694 + BBR_RS11695 0.55 -0.3
378,696 + BBR_RS11695 0.55 -0.3
378,702 - BBR_RS11695 0.56 +0.7
378,702 - BBR_RS11695 0.56 -2.8
378,702 - BBR_RS11695 0.56 +1.0
378,702 - BBR_RS11695 0.56 -0.8
378,702 - BBR_RS11695 0.56 +0.7
378,713 + BBR_RS11695 0.57 +2.0
378,749 + BBR_RS11695 0.61 +0.6
378,749 + BBR_RS11695 0.61 +0.6
378,792 + BBR_RS11695 0.65 +0.7
378,792 + BBR_RS11695 0.65 +0.4
378,792 + BBR_RS11695 0.65 +0.7
378,800 - BBR_RS11695 0.66 +3.2
378,802 - BBR_RS11695 0.66 -0.8
378,842 + BBR_RS11695 0.70 +2.3
378,850 - BBR_RS11695 0.71 -0.8
378,850 - BBR_RS11695 0.71 -1.3
378,852 + BBR_RS11695 0.71 +0.2
378,860 - BBR_RS11695 0.72 -0.3
378,870 + BBR_RS11695 0.73 -1.4
378,907 + BBR_RS11695 0.77 -1.5
378,912 + BBR_RS11695 0.77 +1.6
378,918 - BBR_RS11695 0.78 +2.8
378,920 + BBR_RS11695 0.78 +0.0
378,928 - BBR_RS11695 0.79 -0.4
378,928 - BBR_RS11695 0.79 -1.0
378,945 + BBR_RS11695 0.81 -1.3
378,980 + BBR_RS11695 0.85 +0.3
378,987 - BBR_RS11695 0.85 +0.3
379,043 - +0.8
379,043 - +2.2
379,045 + +0.5
379,060 + +0.3
379,068 - +1.0
379,158 + -0.5
379,160 + +0.7
379,168 - +0.2
379,181 + +2.2
379,204 + +0.3
379,211 + +0.6
379,211 + +0.5
379,212 - +1.7
379,231 + +0.1
379,248 + +0.2
379,292 + +0.5
379,309 + +1.1
379,331 + +1.9
379,341 + +0.4
379,350 + +2.0
379,359 - -0.6
379,408 - -0.8
379,410 - -0.4
379,418 - +0.3
379,419 + +1.7
379,425 + +0.7
379,425 + +1.2
379,425 + +1.2
379,430 + -1.3
379,452 + +2.2
379,460 + BBR_RS20635 0.14 -2.1
379,460 + BBR_RS20635 0.14 +2.1
379,460 + BBR_RS20635 0.14 -2.8
379,460 + BBR_RS20635 0.14 -1.3
379,460 + BBR_RS20635 0.14 -0.8
379,473 - BBR_RS20635 0.20 +1.4
379,534 - BBR_RS20635 0.50 -0.3
379,568 - BBR_RS20635 0.67 -1.7
379,597 + BBR_RS20635 0.81 +0.2
379,597 + BBR_RS20635 0.81 +1.7
379,597 + BBR_RS20635 0.81 -0.4
379,605 - BBR_RS20635 0.85 -1.4
379,605 - BBR_RS20635 0.85 -1.4
379,605 - BBR_RS20635 0.85 -2.3
379,605 - BBR_RS20635 0.85 -0.7
379,615 - +0.7
379,625 + +0.3
379,628 + +0.2
379,638 - -1.3
379,638 - +0.7
379,641 + +1.5
379,658 + -0.8
379,659 + +0.7
379,666 + +1.1
379,674 - +1.2
379,678 + -0.8
379,683 + -1.5
379,683 + +2.3
379,683 + -0.5
379,691 - +1.0
379,691 - +0.8
379,691 - +0.0
379,691 - +0.4
379,691 - -1.4
379,769 - +0.1
379,769 - -0.8
379,777 - -1.4
379,813 + +2.8
379,813 + +0.7
379,813 + -0.8
379,813 + -2.0
379,813 + +0.7
379,821 - -3.2
379,821 - -2.6
379,821 - +0.9
379,844 - -1.8
379,863 - -0.1
379,865 + +1.2
379,886 + -0.2
379,886 + +0.6
379,894 - +2.3
379,895 + -3.6
379,895 + +1.4
379,901 + -3.6
379,901 + -0.5
379,922 - -0.1
379,922 - +1.8
379,979 + -3.4
379,979 + -2.4
380,264 + -3.4

Or see this region's nucleotide sequence