Experiment: 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24650 and AO356_24655 overlap by 8 nucleotides AO356_24655 and AO356_24660 overlap by 4 nucleotides AO356_24660 and AO356_24665 are separated by 9 nucleotides
AO356_24650: AO356_24650 - BatB protein, at 5,575,688 to 5,576,767
_24650
AO356_24655: AO356_24655 - hypothetical protein, at 5,576,760 to 5,577,254
_24655
AO356_24660: AO356_24660 - hypothetical protein, at 5,577,251 to 5,578,195
_24660
AO356_24665: AO356_24665 - AAA family ATPase, at 5,578,205 to 5,579,164
_24665
Position (kb) 5576
5577
5578 Strain fitness (log2 ratio) -1
0
1
2 at 5575.820 kb on + strand, within AO356_24650 at 5575.820 kb on + strand, within AO356_24650 at 5575.820 kb on + strand, within AO356_24650 at 5575.821 kb on - strand, within AO356_24650 at 5575.821 kb on - strand, within AO356_24650 at 5575.858 kb on - strand, within AO356_24650 at 5575.858 kb on - strand, within AO356_24650 at 5575.966 kb on - strand, within AO356_24650 at 5576.138 kb on + strand, within AO356_24650 at 5576.139 kb on - strand, within AO356_24650 at 5576.331 kb on + strand, within AO356_24650 at 5576.582 kb on - strand, within AO356_24650 at 5576.760 kb on + strand at 5576.843 kb on - strand, within AO356_24655 at 5576.843 kb on - strand, within AO356_24655 at 5576.843 kb on - strand, within AO356_24655 at 5576.859 kb on + strand, within AO356_24655 at 5576.860 kb on - strand, within AO356_24655 at 5577.172 kb on - strand, within AO356_24655 at 5577.286 kb on - strand at 5577.294 kb on - strand at 5577.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 20 mM putrescine remove 5,575,820 + AO356_24650 0.12 -0.2 5,575,820 + AO356_24650 0.12 -1.3 5,575,820 + AO356_24650 0.12 +1.9 5,575,821 - AO356_24650 0.12 +0.1 5,575,821 - AO356_24650 0.12 -0.3 5,575,858 - AO356_24650 0.16 +1.1 5,575,858 - AO356_24650 0.16 -1.0 5,575,966 - AO356_24650 0.26 +2.7 5,576,138 + AO356_24650 0.42 +0.3 5,576,139 - AO356_24650 0.42 -0.6 5,576,331 + AO356_24650 0.60 -1.1 5,576,582 - AO356_24650 0.83 -0.5 5,576,760 + -0.2 5,576,843 - AO356_24655 0.17 +0.2 5,576,843 - AO356_24655 0.17 +0.4 5,576,843 - AO356_24655 0.17 -0.8 5,576,859 + AO356_24655 0.20 +0.6 5,576,860 - AO356_24655 0.20 -0.9 5,577,172 - AO356_24655 0.83 -0.3 5,577,286 - -0.4 5,577,294 - +0.2 5,577,320 - -1.2
Or see this region's nucleotide sequence