Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23585

Experiment: 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23580 and AO356_23585 are separated by 84 nucleotidesAO356_23585 and AO356_23590 are separated by 777 nucleotides AO356_23580: AO356_23580 - LuxR family transcriptional regulator, at 5,288,520 to 5,289,239 _23580 AO356_23585: AO356_23585 - hypothetical protein, at 5,289,324 to 5,289,683 _23585 AO356_23590: AO356_23590 - hypothetical protein, at 5,290,461 to 5,294,636 _23590 Position (kb) 5289 5290Strain fitness (log2 ratio) -1 0 1 2 3at 5288.353 kb on - strandat 5288.363 kb on + strandat 5288.363 kb on + strandat 5288.363 kb on + strandat 5288.364 kb on - strandat 5288.385 kb on + strandat 5288.385 kb on + strandat 5288.386 kb on - strandat 5288.386 kb on - strandat 5288.386 kb on - strandat 5288.386 kb on - strandat 5288.386 kb on - strandat 5288.410 kb on - strandat 5288.519 kb on + strandat 5288.649 kb on + strand, within AO356_23580at 5288.649 kb on + strand, within AO356_23580at 5288.649 kb on + strand, within AO356_23580at 5288.650 kb on - strand, within AO356_23580at 5288.650 kb on - strand, within AO356_23580at 5288.650 kb on - strand, within AO356_23580at 5288.650 kb on - strand, within AO356_23580at 5288.651 kb on + strand, within AO356_23580at 5288.652 kb on - strand, within AO356_23580at 5288.793 kb on + strand, within AO356_23580at 5288.793 kb on + strand, within AO356_23580at 5288.793 kb on + strand, within AO356_23580at 5288.794 kb on - strand, within AO356_23580at 5288.794 kb on - strand, within AO356_23580at 5288.794 kb on - strand, within AO356_23580at 5289.063 kb on + strand, within AO356_23580at 5289.063 kb on + strand, within AO356_23580at 5289.064 kb on - strand, within AO356_23580at 5289.171 kb on + strandat 5289.171 kb on + strandat 5289.171 kb on + strandat 5289.172 kb on - strandat 5289.172 kb on - strandat 5289.191 kb on + strandat 5289.191 kb on + strandat 5289.272 kb on + strandat 5289.272 kb on + strandat 5289.273 kb on - strandat 5289.273 kb on - strandat 5289.577 kb on + strand, within AO356_23585at 5289.578 kb on - strand, within AO356_23585at 5289.578 kb on - strand, within AO356_23585at 5289.580 kb on + strand, within AO356_23585at 5289.749 kb on - strandat 5289.774 kb on - strandat 5289.816 kb on + strandat 5289.816 kb on + strandat 5289.816 kb on + strandat 5289.816 kb on + strandat 5289.817 kb on - strandat 5289.830 kb on + strandat 5289.830 kb on + strandat 5289.834 kb on - strandat 5289.882 kb on - strandat 5289.913 kb on - strandat 5289.918 kb on + strandat 5289.918 kb on + strandat 5289.918 kb on + strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.919 kb on - strandat 5289.960 kb on + strandat 5289.988 kb on + strandat 5290.013 kb on + strandat 5290.014 kb on - strandat 5290.016 kb on + strandat 5290.016 kb on + strandat 5290.016 kb on + strandat 5290.016 kb on + strandat 5290.017 kb on - strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.020 kb on + strandat 5290.021 kb on - strandat 5290.021 kb on - strandat 5290.021 kb on - strandat 5290.021 kb on - strandat 5290.051 kb on - strandat 5290.137 kb on + strandat 5290.399 kb on + strandat 5290.400 kb on - strandat 5290.402 kb on - strandat 5290.402 kb on - strandat 5290.515 kb on - strandat 5290.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 mM putrescine
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5,288,353 - +1.0
5,288,363 + +1.3
5,288,363 + +0.8
5,288,363 + +0.3
5,288,364 - +0.1
5,288,385 + -0.2
5,288,385 + +0.6
5,288,386 - +0.5
5,288,386 - +0.3
5,288,386 - +0.9
5,288,386 - -0.4
5,288,386 - -0.9
5,288,410 - -0.1
5,288,519 + +0.2
5,288,649 + AO356_23580 0.18 +0.8
5,288,649 + AO356_23580 0.18 +0.9
5,288,649 + AO356_23580 0.18 +0.6
5,288,650 - AO356_23580 0.18 +1.0
5,288,650 - AO356_23580 0.18 +0.2
5,288,650 - AO356_23580 0.18 -0.2
5,288,650 - AO356_23580 0.18 +0.8
5,288,651 + AO356_23580 0.18 +0.0
5,288,652 - AO356_23580 0.18 +1.8
5,288,793 + AO356_23580 0.38 +0.0
5,288,793 + AO356_23580 0.38 +1.3
5,288,793 + AO356_23580 0.38 +0.5
5,288,794 - AO356_23580 0.38 -0.1
5,288,794 - AO356_23580 0.38 +0.7
5,288,794 - AO356_23580 0.38 +0.1
5,289,063 + AO356_23580 0.75 +0.8
5,289,063 + AO356_23580 0.75 +1.7
5,289,064 - AO356_23580 0.76 +0.7
5,289,171 + -0.8
5,289,171 + -0.5
5,289,171 + +0.7
5,289,172 - +0.0
5,289,172 - -0.8
5,289,191 + +0.0
5,289,191 + +1.2
5,289,272 + +0.5
5,289,272 + +1.9
5,289,273 - +0.8
5,289,273 - -0.7
5,289,577 + AO356_23585 0.70 +1.2
5,289,578 - AO356_23585 0.71 -0.3
5,289,578 - AO356_23585 0.71 -0.5
5,289,580 + AO356_23585 0.71 -0.1
5,289,749 - +0.3
5,289,774 - +0.8
5,289,816 + -1.0
5,289,816 + -0.5
5,289,816 + -0.4
5,289,816 + +1.8
5,289,817 - +2.9
5,289,830 + +0.8
5,289,830 + -0.5
5,289,834 - +0.3
5,289,882 - +0.3
5,289,913 - -0.7
5,289,918 + +0.9
5,289,918 + -0.2
5,289,918 + +1.0
5,289,919 - -0.1
5,289,919 - -0.1
5,289,919 - -0.4
5,289,919 - +0.2
5,289,919 - -0.8
5,289,919 - -0.8
5,289,919 - -1.1
5,289,919 - -0.8
5,289,960 + +1.0
5,289,988 + +0.3
5,290,013 + -0.5
5,290,014 - -0.8
5,290,016 + -0.5
5,290,016 + -1.0
5,290,016 + +0.0
5,290,016 + +0.5
5,290,017 - +0.0
5,290,020 + +0.0
5,290,020 + -0.5
5,290,020 + +0.3
5,290,020 + -0.2
5,290,020 + +1.7
5,290,020 + -0.4
5,290,020 + +0.0
5,290,020 + -0.3
5,290,020 + -0.5
5,290,020 + +1.6
5,290,020 + -0.6
5,290,021 - -0.4
5,290,021 - +0.4
5,290,021 - +0.0
5,290,021 - -0.8
5,290,051 - +0.9
5,290,137 + +0.3
5,290,399 + -0.7
5,290,400 - -0.5
5,290,402 - -0.0
5,290,402 - +1.3
5,290,515 - +0.0
5,290,664 - -0.0

Or see this region's nucleotide sequence