Experiment: 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23445 and AO356_23450 are separated by 70 nucleotides AO356_23450 and AO356_23455 are separated by 4 nucleotides
AO356_23445: AO356_23445 - hypothetical protein, at 5,256,047 to 5,256,829
_23445
AO356_23450: AO356_23450 - LuxR family transcriptional regulator, at 5,256,900 to 5,257,481
_23450
AO356_23455: AO356_23455 - diguanylate cyclase, at 5,257,486 to 5,259,132
_23455
Position (kb) 5256
5257
5258 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5255.900 kb on - strand at 5255.940 kb on + strand at 5255.940 kb on + strand at 5255.941 kb on - strand at 5255.941 kb on - strand at 5255.941 kb on - strand at 5255.942 kb on + strand at 5255.942 kb on + strand at 5255.942 kb on + strand at 5255.943 kb on - strand at 5255.957 kb on - strand at 5255.959 kb on - strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.987 kb on - strand at 5256.025 kb on + strand at 5256.026 kb on - strand at 5256.423 kb on - strand, within AO356_23445 at 5256.467 kb on + strand, within AO356_23445 at 5256.468 kb on - strand, within AO356_23445 at 5256.468 kb on - strand, within AO356_23445 at 5256.468 kb on - strand, within AO356_23445 at 5256.527 kb on + strand, within AO356_23445 at 5256.590 kb on + strand, within AO356_23445 at 5256.590 kb on + strand, within AO356_23445 at 5256.634 kb on + strand, within AO356_23445 at 5256.635 kb on - strand, within AO356_23445 at 5256.735 kb on - strand, within AO356_23445 at 5256.816 kb on - strand at 5256.925 kb on + strand at 5256.926 kb on - strand at 5256.967 kb on + strand, within AO356_23450 at 5256.967 kb on + strand, within AO356_23450 at 5256.968 kb on - strand, within AO356_23450 at 5257.018 kb on + strand, within AO356_23450 at 5257.018 kb on + strand, within AO356_23450 at 5257.018 kb on + strand, within AO356_23450 at 5257.019 kb on - strand, within AO356_23450 at 5257.233 kb on + strand, within AO356_23450 at 5257.233 kb on + strand, within AO356_23450 at 5257.274 kb on + strand, within AO356_23450 at 5257.274 kb on + strand, within AO356_23450 at 5257.274 kb on + strand, within AO356_23450 at 5257.274 kb on + strand, within AO356_23450 at 5257.275 kb on - strand, within AO356_23450 at 5257.275 kb on - strand, within AO356_23450 at 5257.275 kb on - strand, within AO356_23450 at 5257.503 kb on + strand at 5257.606 kb on - strand at 5257.962 kb on - strand, within AO356_23455 at 5258.194 kb on - strand, within AO356_23455 at 5258.194 kb on - strand, within AO356_23455 at 5258.255 kb on - strand, within AO356_23455 at 5258.375 kb on + strand, within AO356_23455 at 5258.376 kb on - strand, within AO356_23455 at 5258.376 kb on - strand, within AO356_23455 at 5258.382 kb on + strand, within AO356_23455
Per-strain Table
Position Strand Gene LocusTag Fraction 20 mM putrescine remove 5,255,900 - +0.2 5,255,940 + -0.2 5,255,940 + +0.8 5,255,941 - -1.0 5,255,941 - +0.9 5,255,941 - -0.2 5,255,942 + +0.2 5,255,942 + -0.3 5,255,942 + -1.2 5,255,943 - +0.2 5,255,957 - -0.3 5,255,959 - -1.2 5,255,986 + -1.2 5,255,986 + +0.2 5,255,986 + -0.7 5,255,986 + -0.9 5,255,986 + -0.4 5,255,987 - +1.2 5,256,025 + -0.1 5,256,026 - +1.0 5,256,423 - AO356_23445 0.48 +0.3 5,256,467 + AO356_23445 0.54 +0.0 5,256,468 - AO356_23445 0.54 +0.5 5,256,468 - AO356_23445 0.54 +2.2 5,256,468 - AO356_23445 0.54 +0.2 5,256,527 + AO356_23445 0.61 +0.5 5,256,590 + AO356_23445 0.69 -0.8 5,256,590 + AO356_23445 0.69 +0.0 5,256,634 + AO356_23445 0.75 +0.2 5,256,635 - AO356_23445 0.75 -0.7 5,256,735 - AO356_23445 0.88 +0.0 5,256,816 - -0.3 5,256,925 + +1.3 5,256,926 - -1.5 5,256,967 + AO356_23450 0.12 -0.7 5,256,967 + AO356_23450 0.12 -0.1 5,256,968 - AO356_23450 0.12 -0.5 5,257,018 + AO356_23450 0.20 -0.1 5,257,018 + AO356_23450 0.20 -0.2 5,257,018 + AO356_23450 0.20 -0.2 5,257,019 - AO356_23450 0.20 -1.0 5,257,233 + AO356_23450 0.57 +1.3 5,257,233 + AO356_23450 0.57 -1.8 5,257,274 + AO356_23450 0.64 +0.3 5,257,274 + AO356_23450 0.64 +0.5 5,257,274 + AO356_23450 0.64 -0.7 5,257,274 + AO356_23450 0.64 -0.1 5,257,275 - AO356_23450 0.64 +0.5 5,257,275 - AO356_23450 0.64 +2.6 5,257,275 - AO356_23450 0.64 -1.3 5,257,503 + +0.1 5,257,606 - +0.1 5,257,962 - AO356_23455 0.29 +0.4 5,258,194 - AO356_23455 0.43 +0.5 5,258,194 - AO356_23455 0.43 -0.2 5,258,255 - AO356_23455 0.47 -0.6 5,258,375 + AO356_23455 0.54 +1.1 5,258,376 - AO356_23455 0.54 -0.5 5,258,376 - AO356_23455 0.54 -0.2 5,258,382 + AO356_23455 0.54 -1.4
Or see this region's nucleotide sequence