Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23345

Experiment: 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23340 and AO356_23345 are separated by 342 nucleotidesAO356_23345 and AO356_23350 are separated by 435 nucleotides AO356_23340: AO356_23340 - chemotaxis protein, at 5,233,260 to 5,235,287 _23340 AO356_23345: AO356_23345 - hypothetical protein, at 5,235,630 to 5,236,736 _23345 AO356_23350: AO356_23350 - S-transferase, at 5,237,172 to 5,238,011 _23350 Position (kb) 5235 5236 5237Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5234.672 kb on - strand, within AO356_23340at 5234.767 kb on + strand, within AO356_23340at 5234.768 kb on - strand, within AO356_23340at 5234.768 kb on - strand, within AO356_23340at 5234.768 kb on - strand, within AO356_23340at 5234.780 kb on + strand, within AO356_23340at 5234.821 kb on + strand, within AO356_23340at 5234.822 kb on - strand, within AO356_23340at 5234.822 kb on - strand, within AO356_23340at 5234.831 kb on + strand, within AO356_23340at 5234.876 kb on + strand, within AO356_23340at 5234.877 kb on - strand, within AO356_23340at 5235.038 kb on - strand, within AO356_23340at 5235.186 kb on + strandat 5235.186 kb on + strandat 5235.187 kb on - strandat 5235.187 kb on - strandat 5235.279 kb on + strandat 5235.280 kb on - strandat 5235.326 kb on + strandat 5235.373 kb on + strandat 5235.373 kb on + strandat 5235.374 kb on - strandat 5235.374 kb on - strandat 5235.374 kb on - strandat 5235.374 kb on - strandat 5235.374 kb on - strandat 5235.374 kb on - strandat 5235.392 kb on + strandat 5235.392 kb on + strandat 5235.412 kb on - strandat 5235.432 kb on + strandat 5235.433 kb on - strandat 5235.460 kb on + strandat 5235.479 kb on - strandat 5235.753 kb on + strand, within AO356_23345at 5235.765 kb on + strand, within AO356_23345at 5235.765 kb on + strand, within AO356_23345at 5235.765 kb on + strand, within AO356_23345at 5235.765 kb on + strand, within AO356_23345at 5235.766 kb on - strand, within AO356_23345at 5235.803 kb on + strand, within AO356_23345at 5235.846 kb on + strand, within AO356_23345at 5235.846 kb on + strand, within AO356_23345at 5235.846 kb on + strand, within AO356_23345at 5235.846 kb on + strand, within AO356_23345at 5235.846 kb on + strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.847 kb on - strand, within AO356_23345at 5235.906 kb on + strand, within AO356_23345at 5235.906 kb on + strand, within AO356_23345at 5235.907 kb on - strand, within AO356_23345at 5235.907 kb on - strand, within AO356_23345at 5235.907 kb on - strand, within AO356_23345at 5235.907 kb on - strand, within AO356_23345at 5235.907 kb on - strand, within AO356_23345at 5235.907 kb on - strand, within AO356_23345at 5236.057 kb on + strand, within AO356_23345at 5236.057 kb on + strand, within AO356_23345at 5236.058 kb on - strand, within AO356_23345at 5236.098 kb on + strand, within AO356_23345at 5236.098 kb on + strand, within AO356_23345at 5236.098 kb on + strand, within AO356_23345at 5236.098 kb on + strand, within AO356_23345at 5236.098 kb on + strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.099 kb on - strand, within AO356_23345at 5236.229 kb on + strand, within AO356_23345at 5236.229 kb on + strand, within AO356_23345at 5236.230 kb on - strand, within AO356_23345at 5236.233 kb on + strand, within AO356_23345at 5236.234 kb on - strand, within AO356_23345at 5236.244 kb on + strand, within AO356_23345at 5236.244 kb on + strand, within AO356_23345at 5236.245 kb on - strand, within AO356_23345at 5236.245 kb on - strand, within AO356_23345at 5236.245 kb on - strand, within AO356_23345at 5236.248 kb on + strand, within AO356_23345at 5236.249 kb on - strand, within AO356_23345at 5236.249 kb on - strand, within AO356_23345at 5236.249 kb on - strand, within AO356_23345at 5236.249 kb on - strand, within AO356_23345at 5236.497 kb on + strand, within AO356_23345at 5236.709 kb on + strandat 5236.709 kb on + strandat 5236.709 kb on + strandat 5236.710 kb on - strandat 5236.710 kb on - strandat 5236.713 kb on + strandat 5236.714 kb on - strandat 5236.714 kb on - strandat 5236.788 kb on - strandat 5236.922 kb on + strandat 5237.305 kb on + strand, within AO356_23350at 5237.305 kb on + strand, within AO356_23350at 5237.305 kb on + strand, within AO356_23350at 5237.305 kb on + strand, within AO356_23350at 5237.305 kb on + strand, within AO356_23350at 5237.306 kb on - strand, within AO356_23350at 5237.306 kb on - strand, within AO356_23350at 5237.338 kb on + strand, within AO356_23350at 5237.338 kb on + strand, within AO356_23350at 5237.340 kb on + strand, within AO356_23350at 5237.340 kb on + strand, within AO356_23350at 5237.340 kb on + strand, within AO356_23350at 5237.341 kb on - strand, within AO356_23350at 5237.341 kb on - strand, within AO356_23350at 5237.341 kb on - strand, within AO356_23350at 5237.341 kb on - strand, within AO356_23350at 5237.366 kb on - strand, within AO356_23350at 5237.398 kb on + strand, within AO356_23350at 5237.398 kb on + strand, within AO356_23350at 5237.398 kb on + strand, within AO356_23350at 5237.399 kb on - strand, within AO356_23350at 5237.518 kb on + strand, within AO356_23350at 5237.519 kb on - strand, within AO356_23350at 5237.641 kb on + strand, within AO356_23350at 5237.641 kb on + strand, within AO356_23350at 5237.642 kb on - strand, within AO356_23350at 5237.642 kb on - strand, within AO356_23350at 5237.642 kb on - strand, within AO356_23350

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 mM putrescine
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5,234,672 - AO356_23340 0.70 +1.7
5,234,767 + AO356_23340 0.74 -0.7
5,234,768 - AO356_23340 0.74 -0.1
5,234,768 - AO356_23340 0.74 -0.5
5,234,768 - AO356_23340 0.74 -0.5
5,234,780 + AO356_23340 0.75 +1.0
5,234,821 + AO356_23340 0.77 -0.4
5,234,822 - AO356_23340 0.77 +2.1
5,234,822 - AO356_23340 0.77 +0.7
5,234,831 + AO356_23340 0.77 +0.6
5,234,876 + AO356_23340 0.80 +0.2
5,234,877 - AO356_23340 0.80 +0.5
5,235,038 - AO356_23340 0.88 -0.1
5,235,186 + +0.4
5,235,186 + -1.0
5,235,187 - -0.2
5,235,187 - -1.1
5,235,279 + -0.4
5,235,280 - +1.5
5,235,326 + -0.1
5,235,373 + -0.7
5,235,373 + -0.5
5,235,374 - -0.5
5,235,374 - -0.6
5,235,374 - +0.2
5,235,374 - -0.0
5,235,374 - -0.4
5,235,374 - +0.5
5,235,392 + -0.2
5,235,392 + +0.6
5,235,412 - +0.8
5,235,432 + +0.5
5,235,433 - +0.2
5,235,460 + +1.2
5,235,479 - +0.6
5,235,753 + AO356_23345 0.11 +0.1
5,235,765 + AO356_23345 0.12 +0.5
5,235,765 + AO356_23345 0.12 -0.3
5,235,765 + AO356_23345 0.12 +0.5
5,235,765 + AO356_23345 0.12 +1.5
5,235,766 - AO356_23345 0.12 -0.1
5,235,803 + AO356_23345 0.16 -0.5
5,235,846 + AO356_23345 0.20 -0.2
5,235,846 + AO356_23345 0.20 +0.3
5,235,846 + AO356_23345 0.20 +1.6
5,235,846 + AO356_23345 0.20 +0.3
5,235,846 + AO356_23345 0.20 -0.8
5,235,847 - AO356_23345 0.20 -0.6
5,235,847 - AO356_23345 0.20 +0.3
5,235,847 - AO356_23345 0.20 -0.7
5,235,847 - AO356_23345 0.20 -0.0
5,235,847 - AO356_23345 0.20 -0.3
5,235,847 - AO356_23345 0.20 +0.3
5,235,847 - AO356_23345 0.20 -0.4
5,235,847 - AO356_23345 0.20 +3.5
5,235,906 + AO356_23345 0.25 +0.5
5,235,906 + AO356_23345 0.25 -0.4
5,235,907 - AO356_23345 0.25 +0.8
5,235,907 - AO356_23345 0.25 -0.3
5,235,907 - AO356_23345 0.25 +2.3
5,235,907 - AO356_23345 0.25 +0.5
5,235,907 - AO356_23345 0.25 -1.9
5,235,907 - AO356_23345 0.25 -1.1
5,236,057 + AO356_23345 0.39 +0.2
5,236,057 + AO356_23345 0.39 -0.1
5,236,058 - AO356_23345 0.39 -0.3
5,236,098 + AO356_23345 0.42 +0.2
5,236,098 + AO356_23345 0.42 +0.7
5,236,098 + AO356_23345 0.42 -0.8
5,236,098 + AO356_23345 0.42 -0.5
5,236,098 + AO356_23345 0.42 +0.1
5,236,099 - AO356_23345 0.42 +0.6
5,236,099 - AO356_23345 0.42 +0.2
5,236,099 - AO356_23345 0.42 -0.8
5,236,099 - AO356_23345 0.42 +0.4
5,236,099 - AO356_23345 0.42 -0.4
5,236,099 - AO356_23345 0.42 -0.3
5,236,099 - AO356_23345 0.42 +0.2
5,236,229 + AO356_23345 0.54 +0.8
5,236,229 + AO356_23345 0.54 -0.4
5,236,230 - AO356_23345 0.54 +0.4
5,236,233 + AO356_23345 0.54 -0.4
5,236,234 - AO356_23345 0.55 -0.5
5,236,244 + AO356_23345 0.55 -0.4
5,236,244 + AO356_23345 0.55 -0.5
5,236,245 - AO356_23345 0.56 -1.8
5,236,245 - AO356_23345 0.56 -0.5
5,236,245 - AO356_23345 0.56 -0.3
5,236,248 + AO356_23345 0.56 -1.1
5,236,249 - AO356_23345 0.56 -0.6
5,236,249 - AO356_23345 0.56 +1.5
5,236,249 - AO356_23345 0.56 -0.3
5,236,249 - AO356_23345 0.56 +0.6
5,236,497 + AO356_23345 0.78 -0.1
5,236,709 + -0.3
5,236,709 + -0.3
5,236,709 + -0.5
5,236,710 - -0.6
5,236,710 - +0.8
5,236,713 + -0.5
5,236,714 - +0.8
5,236,714 - +0.1
5,236,788 - +0.2
5,236,922 + -0.4
5,237,305 + AO356_23350 0.16 +0.0
5,237,305 + AO356_23350 0.16 -0.8
5,237,305 + AO356_23350 0.16 +0.5
5,237,305 + AO356_23350 0.16 +0.6
5,237,305 + AO356_23350 0.16 -0.4
5,237,306 - AO356_23350 0.16 -0.3
5,237,306 - AO356_23350 0.16 +0.9
5,237,338 + AO356_23350 0.20 +0.7
5,237,338 + AO356_23350 0.20 +0.4
5,237,340 + AO356_23350 0.20 +0.3
5,237,340 + AO356_23350 0.20 +0.5
5,237,340 + AO356_23350 0.20 -0.1
5,237,341 - AO356_23350 0.20 -0.9
5,237,341 - AO356_23350 0.20 +0.3
5,237,341 - AO356_23350 0.20 -0.6
5,237,341 - AO356_23350 0.20 -0.4
5,237,366 - AO356_23350 0.23 -0.0
5,237,398 + AO356_23350 0.27 +1.1
5,237,398 + AO356_23350 0.27 +0.2
5,237,398 + AO356_23350 0.27 +1.2
5,237,399 - AO356_23350 0.27 -0.0
5,237,518 + AO356_23350 0.41 -0.1
5,237,519 - AO356_23350 0.41 +0.6
5,237,641 + AO356_23350 0.56 -1.3
5,237,641 + AO356_23350 0.56 +0.8
5,237,642 - AO356_23350 0.56 +0.1
5,237,642 - AO356_23350 0.56 +0.6
5,237,642 - AO356_23350 0.56 -0.1

Or see this region's nucleotide sequence