Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04200

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04190 and PGA1_c04200 are separated by 159 nucleotidesPGA1_c04200 and PGA1_c04210 overlap by 4 nucleotides PGA1_c04190: PGA1_c04190 - phosphate uptake ABC transporter periplasmic solute-binding protein PhoD, at 406,582 to 407,490 _c04190 PGA1_c04200: PGA1_c04200 - phosphate uptake ABC transporter permease protein PhoE, at 407,650 to 408,519 _c04200 PGA1_c04210: PGA1_c04210 - phosphate uptake ABC transporter permease protein PhoT, at 408,516 to 409,886 _c04210 Position (kb) 407 408 409Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 406.701 kb on - strand, within PGA1_c04190at 406.721 kb on - strand, within PGA1_c04190at 406.761 kb on - strand, within PGA1_c04190at 406.788 kb on - strand, within PGA1_c04190at 406.788 kb on - strand, within PGA1_c04190at 406.796 kb on + strand, within PGA1_c04190at 406.833 kb on + strand, within PGA1_c04190at 406.882 kb on + strand, within PGA1_c04190at 406.895 kb on - strand, within PGA1_c04190at 406.924 kb on + strand, within PGA1_c04190at 406.924 kb on + strand, within PGA1_c04190at 406.926 kb on - strand, within PGA1_c04190at 406.953 kb on - strand, within PGA1_c04190at 406.986 kb on + strand, within PGA1_c04190at 406.986 kb on + strand, within PGA1_c04190at 406.989 kb on - strand, within PGA1_c04190at 407.071 kb on + strand, within PGA1_c04190at 407.122 kb on + strand, within PGA1_c04190at 407.125 kb on - strand, within PGA1_c04190at 407.132 kb on + strand, within PGA1_c04190at 407.242 kb on + strand, within PGA1_c04190at 407.245 kb on - strand, within PGA1_c04190at 407.263 kb on - strand, within PGA1_c04190at 407.280 kb on + strand, within PGA1_c04190at 407.280 kb on + strand, within PGA1_c04190at 407.288 kb on - strand, within PGA1_c04190at 407.288 kb on - strand, within PGA1_c04190at 407.288 kb on - strand, within PGA1_c04190at 407.300 kb on + strand, within PGA1_c04190at 407.300 kb on + strand, within PGA1_c04190at 407.308 kb on - strand, within PGA1_c04190at 407.311 kb on - strand, within PGA1_c04190at 407.315 kb on + strand, within PGA1_c04190at 407.318 kb on - strand, within PGA1_c04190at 407.401 kb on - strandat 407.415 kb on + strandat 407.415 kb on + strandat 407.415 kb on + strandat 407.422 kb on - strandat 407.423 kb on - strandat 407.423 kb on - strandat 407.447 kb on + strandat 407.447 kb on + strandat 407.447 kb on + strandat 407.455 kb on - strandat 407.455 kb on - strandat 407.455 kb on - strandat 407.455 kb on - strandat 407.455 kb on - strandat 407.455 kb on - strandat 407.499 kb on - strandat 407.512 kb on - strandat 407.517 kb on + strandat 407.520 kb on + strandat 407.528 kb on - strandat 407.537 kb on + strandat 407.569 kb on - strandat 407.571 kb on + strandat 407.571 kb on + strandat 407.571 kb on + strandat 407.571 kb on + strandat 407.571 kb on + strandat 407.571 kb on + strandat 407.571 kb on + strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.582 kb on - strandat 407.665 kb on + strandat 407.737 kb on - strand, within PGA1_c04200at 407.806 kb on + strand, within PGA1_c04200at 407.859 kb on + strand, within PGA1_c04200at 407.885 kb on - strand, within PGA1_c04200at 407.902 kb on + strand, within PGA1_c04200at 407.902 kb on + strand, within PGA1_c04200at 407.907 kb on + strand, within PGA1_c04200at 407.980 kb on + strand, within PGA1_c04200at 407.980 kb on + strand, within PGA1_c04200at 408.012 kb on - strand, within PGA1_c04200at 408.124 kb on - strand, within PGA1_c04200at 408.165 kb on + strand, within PGA1_c04200at 408.225 kb on - strand, within PGA1_c04200at 408.255 kb on + strand, within PGA1_c04200at 408.256 kb on + strand, within PGA1_c04200at 408.280 kb on + strand, within PGA1_c04200at 408.304 kb on + strand, within PGA1_c04200at 408.379 kb on - strand, within PGA1_c04200at 408.395 kb on + strand, within PGA1_c04200at 408.486 kb on - strandat 408.539 kb on + strandat 408.541 kb on + strandat 408.541 kb on + strandat 408.549 kb on - strandat 408.549 kb on - strandat 408.549 kb on - strandat 408.549 kb on - strandat 408.549 kb on - strandat 408.549 kb on - strandat 408.611 kb on - strandat 408.793 kb on - strand, within PGA1_c04210at 408.897 kb on + strand, within PGA1_c04210at 408.945 kb on + strand, within PGA1_c04210at 409.062 kb on + strand, within PGA1_c04210at 409.127 kb on - strand, within PGA1_c04210at 409.127 kb on - strand, within PGA1_c04210at 409.132 kb on - strand, within PGA1_c04210at 409.137 kb on - strand, within PGA1_c04210at 409.153 kb on - strand, within PGA1_c04210at 409.215 kb on + strand, within PGA1_c04210at 409.228 kb on - strand, within PGA1_c04210at 409.231 kb on + strand, within PGA1_c04210at 409.244 kb on - strand, within PGA1_c04210at 409.296 kb on + strand, within PGA1_c04210at 409.316 kb on + strand, within PGA1_c04210at 409.354 kb on + strand, within PGA1_c04210at 409.377 kb on - strand, within PGA1_c04210at 409.396 kb on - strand, within PGA1_c04210at 409.417 kb on - strand, within PGA1_c04210at 409.417 kb on - strand, within PGA1_c04210at 409.417 kb on - strand, within PGA1_c04210at 409.422 kb on - strand, within PGA1_c04210at 409.441 kb on + strand, within PGA1_c04210at 409.494 kb on - strand, within PGA1_c04210

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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406,701 - PGA1_c04190 0.13 -0.8
406,721 - PGA1_c04190 0.15 +0.2
406,761 - PGA1_c04190 0.20 +0.3
406,788 - PGA1_c04190 0.23 -1.1
406,788 - PGA1_c04190 0.23 +1.5
406,796 + PGA1_c04190 0.24 -0.6
406,833 + PGA1_c04190 0.28 +0.4
406,882 + PGA1_c04190 0.33 -0.0
406,895 - PGA1_c04190 0.34 -0.7
406,924 + PGA1_c04190 0.38 +1.8
406,924 + PGA1_c04190 0.38 +0.4
406,926 - PGA1_c04190 0.38 -0.4
406,953 - PGA1_c04190 0.41 +1.1
406,986 + PGA1_c04190 0.44 +0.9
406,986 + PGA1_c04190 0.44 -0.8
406,989 - PGA1_c04190 0.45 +0.1
407,071 + PGA1_c04190 0.54 -0.8
407,122 + PGA1_c04190 0.59 -0.2
407,125 - PGA1_c04190 0.60 -0.3
407,132 + PGA1_c04190 0.61 -1.1
407,242 + PGA1_c04190 0.73 -0.2
407,245 - PGA1_c04190 0.73 -0.1
407,263 - PGA1_c04190 0.75 +0.1
407,280 + PGA1_c04190 0.77 +0.5
407,280 + PGA1_c04190 0.77 +0.1
407,288 - PGA1_c04190 0.78 -1.1
407,288 - PGA1_c04190 0.78 -0.1
407,288 - PGA1_c04190 0.78 +0.6
407,300 + PGA1_c04190 0.79 -0.4
407,300 + PGA1_c04190 0.79 +0.3
407,308 - PGA1_c04190 0.80 -0.4
407,311 - PGA1_c04190 0.80 -0.4
407,315 + PGA1_c04190 0.81 +0.2
407,318 - PGA1_c04190 0.81 +1.6
407,401 - +0.2
407,415 + +0.2
407,415 + +0.9
407,415 + -1.7
407,422 - -1.2
407,423 - -0.7
407,423 - -0.0
407,447 + +0.1
407,447 + +0.5
407,447 + +1.5
407,455 - -1.0
407,455 - +1.6
407,455 - -0.4
407,455 - +0.2
407,455 - -0.2
407,455 - +0.5
407,499 - +1.1
407,512 - -0.3
407,517 + +2.3
407,520 + -1.3
407,528 - +0.6
407,537 + +0.2
407,569 - +0.2
407,571 + -1.0
407,571 + +0.3
407,571 + -1.1
407,571 + +0.5
407,571 + +0.9
407,571 + -1.3
407,571 + -3.1
407,579 - +0.4
407,579 - +0.2
407,579 - +0.6
407,579 - -1.4
407,579 - +0.7
407,579 - +1.3
407,579 - +0.9
407,579 - +0.9
407,579 - +0.9
407,579 - +0.8
407,582 - -0.2
407,665 + -0.0
407,737 - PGA1_c04200 0.10 -1.0
407,806 + PGA1_c04200 0.18 -0.4
407,859 + PGA1_c04200 0.24 -0.1
407,885 - PGA1_c04200 0.27 -0.9
407,902 + PGA1_c04200 0.29 +0.9
407,902 + PGA1_c04200 0.29 -0.6
407,907 + PGA1_c04200 0.30 -0.0
407,980 + PGA1_c04200 0.38 -0.4
407,980 + PGA1_c04200 0.38 +0.9
408,012 - PGA1_c04200 0.42 -0.2
408,124 - PGA1_c04200 0.54 -0.7
408,165 + PGA1_c04200 0.59 -0.1
408,225 - PGA1_c04200 0.66 +0.9
408,255 + PGA1_c04200 0.70 -0.9
408,256 + PGA1_c04200 0.70 -0.6
408,280 + PGA1_c04200 0.72 -0.6
408,304 + PGA1_c04200 0.75 +0.1
408,379 - PGA1_c04200 0.84 +0.0
408,395 + PGA1_c04200 0.86 -2.8
408,486 - +1.2
408,539 + +1.5
408,541 + -0.6
408,541 + -1.0
408,549 - +0.1
408,549 - -2.2
408,549 - -0.4
408,549 - +0.2
408,549 - +0.3
408,549 - -0.0
408,611 - -0.5
408,793 - PGA1_c04210 0.20 -3.0
408,897 + PGA1_c04210 0.28 -1.0
408,945 + PGA1_c04210 0.31 +0.1
409,062 + PGA1_c04210 0.40 -0.1
409,127 - PGA1_c04210 0.45 +1.9
409,127 - PGA1_c04210 0.45 +0.9
409,132 - PGA1_c04210 0.45 -0.8
409,137 - PGA1_c04210 0.45 -0.0
409,153 - PGA1_c04210 0.46 +0.8
409,215 + PGA1_c04210 0.51 -0.2
409,228 - PGA1_c04210 0.52 +0.3
409,231 + PGA1_c04210 0.52 -0.2
409,244 - PGA1_c04210 0.53 -0.1
409,296 + PGA1_c04210 0.57 +1.1
409,316 + PGA1_c04210 0.58 -0.1
409,354 + PGA1_c04210 0.61 -0.4
409,377 - PGA1_c04210 0.63 +0.3
409,396 - PGA1_c04210 0.64 -0.4
409,417 - PGA1_c04210 0.66 +0.2
409,417 - PGA1_c04210 0.66 -0.5
409,417 - PGA1_c04210 0.66 +0.5
409,422 - PGA1_c04210 0.66 -0.9
409,441 + PGA1_c04210 0.67 +0.7
409,494 - PGA1_c04210 0.71 -1.0

Or see this region's nucleotide sequence