Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00420 and PGA1_65p00430 are separated by 8 nucleotides PGA1_65p00430 and PGA1_65p00440 are separated by 154 nucleotides
PGA1_65p00420: PGA1_65p00420 - putative ABC type transporter, at 57,381 to 58,289
_65p00420
PGA1_65p00430: PGA1_65p00430 - putative glycosyl transferase, at 58,298 to 59,341
_65p00430
PGA1_65p00440: PGA1_65p00440 - UDP-glucuronate 5'-epimerase, at 59,496 to 60,506
_65p00440
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 57.419 kb on - strand at 57.451 kb on + strand at 57.454 kb on - strand at 57.485 kb on - strand, within PGA1_65p00420 at 57.634 kb on - strand, within PGA1_65p00420 at 57.748 kb on - strand, within PGA1_65p00420 at 57.784 kb on - strand, within PGA1_65p00420 at 57.784 kb on - strand, within PGA1_65p00420 at 58.026 kb on + strand, within PGA1_65p00420 at 58.034 kb on - strand, within PGA1_65p00420 at 58.106 kb on + strand, within PGA1_65p00420 at 58.186 kb on - strand, within PGA1_65p00420 at 58.196 kb on - strand, within PGA1_65p00420 at 58.366 kb on + strand at 58.366 kb on + strand at 58.550 kb on + strand, within PGA1_65p00430 at 58.565 kb on - strand, within PGA1_65p00430 at 58.633 kb on + strand at 58.633 kb on + strand, within PGA1_65p00430 at 58.633 kb on + strand, within PGA1_65p00430 at 58.641 kb on - strand, within PGA1_65p00430 at 58.646 kb on - strand, within PGA1_65p00430 at 58.648 kb on - strand, within PGA1_65p00430 at 58.651 kb on + strand, within PGA1_65p00430 at 58.736 kb on + strand, within PGA1_65p00430 at 58.820 kb on - strand, within PGA1_65p00430 at 58.931 kb on + strand, within PGA1_65p00430 at 58.939 kb on - strand, within PGA1_65p00430 at 59.115 kb on + strand, within PGA1_65p00430 at 59.316 kb on + strand at 59.393 kb on - strand at 59.459 kb on + strand at 60.201 kb on + strand, within PGA1_65p00440
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 57,419 - +0.3 57,451 + -0.7 57,454 - -0.4 57,485 - PGA1_65p00420 0.11 -0.4 57,634 - PGA1_65p00420 0.28 +0.5 57,748 - PGA1_65p00420 0.40 -0.9 57,784 - PGA1_65p00420 0.44 -1.3 57,784 - PGA1_65p00420 0.44 -0.3 58,026 + PGA1_65p00420 0.71 +0.7 58,034 - PGA1_65p00420 0.72 +0.1 58,106 + PGA1_65p00420 0.80 +0.1 58,186 - PGA1_65p00420 0.89 -0.1 58,196 - PGA1_65p00420 0.90 -0.8 58,366 + +0.6 58,366 + -0.1 58,550 + PGA1_65p00430 0.24 -1.6 58,565 - PGA1_65p00430 0.26 -0.7 58,633 + +0.3 58,633 + PGA1_65p00430 0.32 +0.5 58,633 + PGA1_65p00430 0.32 -0.3 58,641 - PGA1_65p00430 0.33 -2.9 58,646 - PGA1_65p00430 0.33 -0.6 58,648 - PGA1_65p00430 0.34 -1.9 58,651 + PGA1_65p00430 0.34 -0.7 58,736 + PGA1_65p00430 0.42 -0.1 58,820 - PGA1_65p00430 0.50 +0.7 58,931 + PGA1_65p00430 0.61 -1.6 58,939 - PGA1_65p00430 0.61 -1.6 59,115 + PGA1_65p00430 0.78 +0.4 59,316 + +1.2 59,393 - -0.1 59,459 + +0.0 60,201 + PGA1_65p00440 0.70 -0.4
Or see this region's nucleotide sequence