Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20470

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,121,721	-		PGA1_c20460	0.11	-2.0
2,121,729	+		PGA1_c20460	0.11	+0.3
2,121,735	+		PGA1_c20460	0.12	-1.1
2,121,737	-		PGA1_c20460	0.12	+0.9
2,121,793	-		PGA1_c20460	0.18	+0.5
2,121,795	+		PGA1_c20460	0.18	+0.6
2,121,802	-		PGA1_c20460	0.18	-0.6
2,121,808	+		PGA1_c20460	0.19	-0.8
2,121,876	+		PGA1_c20460	0.26	+0.2
2,121,881	+		PGA1_c20460	0.26	-0.5
2,121,881	+		PGA1_c20460	0.26	-0.6
2,121,886	+		PGA1_c20460	0.27	+0.7
2,121,887	+		PGA1_c20460	0.27	+0.5
2,121,889	-		PGA1_c20460	0.27	+0.3
2,121,901	-		PGA1_c20460	0.28	+1.5
2,121,948	-		PGA1_c20460	0.33	-0.4
2,121,948	-		PGA1_c20460	0.33	+0.0
2,121,952	-		PGA1_c20460	0.33	-1.4
2,121,968	+		PGA1_c20460	0.35	-0.2
2,121,976	-		PGA1_c20460	0.35	-0.8
2,121,976	-		PGA1_c20460	0.35	-1.0
2,121,978	-		PGA1_c20460	0.36	+1.9
2,122,025	+		PGA1_c20460	0.40	+0.4
2,122,067	+		PGA1_c20460	0.44	+0.2
2,122,076	+		PGA1_c20460	0.45	+1.0
2,122,078	+		PGA1_c20460	0.45	-1.7
2,122,083	+		PGA1_c20460	0.46	+1.8
2,122,084	-		PGA1_c20460	0.46	+0.0
2,122,084	-		PGA1_c20460	0.46	-0.6
2,122,088	-		PGA1_c20460	0.46	-0.4
2,122,122	-		PGA1_c20460	0.50	+0.8
2,122,123	+		PGA1_c20460	0.50	-0.4
2,122,147	+		PGA1_c20460	0.52	-0.4
2,122,147	+		PGA1_c20460	0.52	-0.2
2,122,155	-		PGA1_c20460	0.53	+0.3
2,122,160	+		PGA1_c20460	0.53	+1.3
2,122,165	-		PGA1_c20460	0.54	+0.2
2,122,172	+		PGA1_c20460	0.55	-1.7
2,122,197	-		PGA1_c20460	0.57	+0.4
2,122,197	-		PGA1_c20460	0.57	-2.1
2,122,285	-		PGA1_c20460	0.66	-0.2
2,122,327	+		PGA1_c20460	0.70	-0.5
2,122,332	+		PGA1_c20460	0.70	+0.3
2,122,332	+		PGA1_c20460	0.70	+0.5
2,122,335	-		PGA1_c20460	0.71	+0.3
2,122,340	-		PGA1_c20460	0.71	-0.8
2,122,340	-		PGA1_c20460	0.71	-0.2
2,122,340	-		PGA1_c20460	0.71	+0.9
2,122,340	-		PGA1_c20460	0.71	+0.6
2,122,340	-		PGA1_c20460	0.71	+0.0
2,122,340	-		PGA1_c20460	0.71	-0.1
2,122,361	+		PGA1_c20460	0.73	+0.0
2,122,367	+		PGA1_c20460	0.74	-1.7
2,122,368	-		PGA1_c20460	0.74	+0.6
2,122,373	+		PGA1_c20460	0.74	+0.9
2,122,444	-		PGA1_c20460	0.81	+0.3
2,122,475	-		PGA1_c20460	0.84	+0.3
2,122,496	-		PGA1_c20460	0.86	+0.8
2,122,535	+				+1.2
2,122,543	-				+0.3
2,122,543	-				-0.7
2,122,557	-				+0.2
2,122,557	-				+0.8
2,122,637	+				+0.4
2,122,637	+				-0.0
2,122,637	+				-0.5
2,122,637	+				+0.6
2,122,637	+				-2.3
2,122,637	+				+0.2
2,122,637	+				+0.2
2,122,637	+				-0.5
2,122,637	+				+0.8
2,122,637	+				+0.2
2,122,637	+				+1.0
2,122,637	+				-0.1
2,122,637	+				-2.2
2,122,645	-				-0.5
2,122,645	-				-1.3
2,122,645	-				-0.3
2,122,645	-				+0.5
2,122,645	-				+1.4
2,122,645	-				+0.6
2,122,645	-				+0.3
2,122,645	-				-1.7
2,122,645	-				+1.5
2,122,645	-				-0.4
2,122,645	-				-0.5
2,122,645	-				+1.5
2,122,645	-				+0.1
2,122,645	-				-0.6
2,122,645	-				+0.3
2,122,645	-				-0.3
2,122,645	-				-0.4
2,122,670	+				+0.2
2,122,673	-				+0.5
2,122,680	-				-0.0
2,122,682	+				+0.6
2,122,682	+				+0.7
2,122,690	-				-0.4
2,122,690	-				+0.9
2,122,690	-				-0.2
2,122,690	-				+1.5
2,122,693	+				+0.3
2,122,701	-				-0.4
2,122,701	-				-1.4
2,122,701	-				+0.6
2,122,753	+				-0.4
2,122,763	+				+1.0
2,122,766	-				-0.6
2,122,774	-				-1.7
2,122,852	-		PGA1_c20470	0.21	-0.3
2,122,852	-		PGA1_c20470	0.21	-0.1
2,122,852	-		PGA1_c20470	0.21	-0.8
2,122,852	-		PGA1_c20470	0.21	-0.9
2,122,873	-		PGA1_c20470	0.24	+1.3
2,122,875	+		PGA1_c20470	0.24	+0.7
2,122,880	+		PGA1_c20470	0.25	-1.0
2,122,880	+		PGA1_c20470	0.25	+0.4
2,122,880	+		PGA1_c20470	0.25	+0.2
2,122,880	+		PGA1_c20470	0.25	-0.7
2,122,888	-		PGA1_c20470	0.26	-1.0
2,122,888	-		PGA1_c20470	0.26	+0.5
2,122,913	+		PGA1_c20470	0.30	-0.4
2,122,921	-		PGA1_c20470	0.32	-1.2
2,122,921	-		PGA1_c20470	0.32	-0.1
2,122,921	-		PGA1_c20470	0.32	-0.1
2,122,922	+		PGA1_c20470	0.32	+1.0
2,122,922	+		PGA1_c20470	0.32	-1.5
2,122,930	-		PGA1_c20470	0.33	+0.6
2,122,930	-		PGA1_c20470	0.33	+0.8
2,122,930	-		PGA1_c20470	0.33	+0.6
2,122,941	+		PGA1_c20470	0.35	+0.2
2,122,948	+		PGA1_c20470	0.36	+1.5
2,122,948	+		PGA1_c20470	0.36	-0.5
2,122,956	-		PGA1_c20470	0.37	-0.4
2,123,076	+		PGA1_c20470	0.56	+0.2
2,123,083	+		PGA1_c20470	0.57	+0.1
2,123,083	-		PGA1_c20470	0.57	-0.3
2,123,084	-		PGA1_c20470	0.57	+0.2
2,123,144	+		PGA1_c20470	0.67	+0.1
2,123,147	-		PGA1_c20470	0.67	-0.0
2,123,147	-		PGA1_c20470	0.67	+0.2
2,123,152	-		PGA1_c20470	0.68	+0.5
2,123,166	+		PGA1_c20470	0.70	-0.2
2,123,176	+		PGA1_c20470	0.72	-1.5
2,123,231	+		PGA1_c20470	0.80	+0.4
2,123,231	+		PGA1_c20470	0.80	+0.3
2,123,231	+		PGA1_c20470	0.80	+0.6
2,123,321	-				-0.8
2,123,329	+				+0.8
2,123,329	+				+0.0
2,123,350	+				-0.6
2,123,353	-				+1.2
2,123,434	+				+1.5
2,123,500	-		PGA1_c20480	0.80	-0.3
2,123,500	-		PGA1_c20480	0.80	-0.0
2,123,529	+				-0.2
2,123,547	+				+0.4
2,123,555	-				+0.2
2,123,555	-				+0.0
2,123,673	-				-0.0
2,123,689	+				+0.5
2,123,689	+				+0.7
2,123,689	+				+0.5
2,123,697	-		PGA1_c20490	0.11	-1.5
2,123,697	-		PGA1_c20490	0.11	-1.5
2,123,697	-		PGA1_c20490	0.11	+0.0
2,123,697	-		PGA1_c20490	0.11	+0.1
2,123,697	-		PGA1_c20490	0.11	+0.6
2,123,697	-		PGA1_c20490	0.11	-0.2
2,123,697	-		PGA1_c20490	0.11	-1.2
2,123,697	-		PGA1_c20490	0.11	-1.0
2,123,697	-		PGA1_c20490	0.11	-0.2
2,123,697	-		PGA1_c20490	0.11	+0.4
2,123,801	+		PGA1_c20490	0.34	-0.9
2,123,841	-		PGA1_c20490	0.42	+0.0
2,123,923	+		PGA1_c20490	0.60	+0.4
2,123,933	+		PGA1_c20490	0.62	+0.0
2,124,089	-				+1.3
2,124,251	-				+0.9
2,124,257	-				-0.3
2,124,300	+				+0.1
2,124,303	-				+0.3