Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18470

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
1,925,831	+		PGA1_c18450	0.62	+0.4
1,925,831	+		PGA1_c18450	0.62	-0.6
1,925,831	+		PGA1_c18450	0.62	+0.3
1,925,837	-		PGA1_c18450	0.64	+2.4
1,925,839	-		PGA1_c18450	0.64	+0.1
1,925,844	-		PGA1_c18450	0.66	+0.2
1,925,848	+		PGA1_c18450	0.67	+0.6
1,925,856	-		PGA1_c18450	0.69	+1.2
1,925,856	-		PGA1_c18450	0.69	-0.5
1,925,886	-		PGA1_c18450	0.77	+0.7
1,925,896	-		PGA1_c18450	0.79	-1.9
1,925,909	+		PGA1_c18450	0.83	+0.4
1,925,923	+		PGA1_c18450	0.87	+0.2
1,925,931	-		PGA1_c18450	0.89	-1.3
1,925,931	-		PGA1_c18450	0.89	+0.4
1,925,971	+				-0.3
1,925,984	+				+0.8
1,926,063	+		PGA1_c18460	0.12	+0.8
1,926,068	+		PGA1_c18460	0.13	+0.6
1,926,068	+		PGA1_c18460	0.13	-0.7
1,926,076	-		PGA1_c18460	0.14	+0.1
1,926,114	-		PGA1_c18460	0.19	+0.3
1,926,126	-		PGA1_c18460	0.20	+0.5
1,926,126	-		PGA1_c18460	0.20	-1.0
1,926,131	-		PGA1_c18460	0.21	+0.4
1,926,131	-		PGA1_c18460	0.21	+0.3
1,926,138	+		PGA1_c18460	0.22	-0.7
1,926,138	+		PGA1_c18460	0.22	-1.0
1,926,138	+		PGA1_c18460	0.22	-1.6
1,926,141	-		PGA1_c18460	0.22	-1.2
1,926,146	-		PGA1_c18460	0.23	-1.6
1,926,148	+		PGA1_c18460	0.23	+0.2
1,926,148	+		PGA1_c18460	0.23	-1.8
1,926,148	+		PGA1_c18460	0.23	+0.6
1,926,156	-		PGA1_c18460	0.24	-0.2
1,926,156	-		PGA1_c18460	0.24	+1.3
1,926,158	+		PGA1_c18460	0.25	+0.5
1,926,158	+		PGA1_c18460	0.25	-0.6
1,926,158	+		PGA1_c18460	0.25	+1.0
1,926,201	-		PGA1_c18460	0.30	+2.1
1,926,201	-		PGA1_c18460	0.30	+0.3
1,926,231	+		PGA1_c18460	0.34	-0.2
1,926,266	-		PGA1_c18460	0.39	+0.7
1,926,274	+		PGA1_c18460	0.40	+0.7
1,926,279	+		PGA1_c18460	0.41	+0.7
1,926,296	-		PGA1_c18460	0.43	-0.5
1,926,321	+		PGA1_c18460	0.46	+0.2
1,926,340	+		PGA1_c18460	0.49	-1.9
1,926,369	+		PGA1_c18460	0.53	+0.2
1,926,433	-		PGA1_c18460	0.61	-0.4
1,926,436	+		PGA1_c18460	0.61	+0.3
1,926,436	+		PGA1_c18460	0.61	-1.1
1,926,440	+		PGA1_c18460	0.62	-1.4
1,926,441	+		PGA1_c18460	0.62	+0.2
1,926,477	-		PGA1_c18460	0.67	+0.5
1,926,482	-		PGA1_c18460	0.68	+1.6
1,926,515	-		PGA1_c18460	0.72	-1.0
1,926,518	-		PGA1_c18460	0.72	-0.5
1,926,519	+		PGA1_c18460	0.73	+1.3
1,926,520	-		PGA1_c18460	0.73	-1.6
1,926,537	-		PGA1_c18460	0.75	+0.2
1,926,570	-		PGA1_c18460	0.79	+1.1
1,926,571	+		PGA1_c18460	0.79	+1.1
1,926,584	-		PGA1_c18460	0.81	-0.9
1,926,594	+		PGA1_c18460	0.82	+0.9
1,926,632	+		PGA1_c18460	0.88	-0.4
1,926,632	+		PGA1_c18460	0.88	+0.5
1,926,640	-		PGA1_c18460	0.89	-0.5
1,926,640	-		PGA1_c18460	0.89	+0.9
1,926,651	-				-0.1
1,926,671	+				-0.2
1,926,684	-				+0.6
1,926,696	-				+1.8
1,926,725	+				+0.3
1,926,727	-				-0.7
1,926,739	-				+0.6
1,926,744	-				+0.7
1,926,758	-				+2.0
1,926,772	-				+0.4
1,926,805	+				+0.5
1,926,813	-		PGA1_c18470	0.11	-0.3
1,926,813	-		PGA1_c18470	0.11	-2.3
1,926,844	-		PGA1_c18470	0.24	+1.1
1,926,884	+		PGA1_c18470	0.40	-0.1
1,926,886	+		PGA1_c18470	0.41	+0.8
1,926,886	+		PGA1_c18470	0.41	-1.0
1,926,886	+		PGA1_c18470	0.41	+0.2
1,926,886	+		PGA1_c18470	0.41	+0.6
1,926,886	+		PGA1_c18470	0.41	-1.2
1,926,891	+		PGA1_c18470	0.43	+0.9
1,926,894	-		PGA1_c18470	0.44	+0.6
1,926,894	-		PGA1_c18470	0.44	+0.8
1,926,894	-		PGA1_c18470	0.44	+1.3
1,926,894	-		PGA1_c18470	0.44	+0.1
1,926,894	-		PGA1_c18470	0.44	+0.7
1,926,894	-		PGA1_c18470	0.44	+0.4
1,926,894	-		PGA1_c18470	0.44	+1.0
1,926,894	-		PGA1_c18470	0.44	+0.8
1,926,894	-		PGA1_c18470	0.44	-1.2
1,926,904	-		PGA1_c18470	0.48	+1.2
1,926,906	+		PGA1_c18470	0.49	+0.1
1,926,906	+		PGA1_c18470	0.49	+0.8
1,926,940	+		PGA1_c18470	0.63	-1.3
1,926,946	+		PGA1_c18470	0.65	-0.6
1,926,954	-		PGA1_c18470	0.69	+1.3
1,926,957	+		PGA1_c18470	0.70	-0.4
1,926,964	-		PGA1_c18470	0.73	+0.8
1,926,970	-		PGA1_c18470	0.75	+0.6
1,926,973	-		PGA1_c18470	0.76	+1.6
1,926,980	+		PGA1_c18470	0.79	-0.4
1,926,985	+		PGA1_c18470	0.81	+0.6
1,926,985	+		PGA1_c18470	0.81	-0.3
1,926,985	+		PGA1_c18470	0.81	+0.2
1,926,985	+		PGA1_c18470	0.81	-0.8
1,926,985	+		PGA1_c18470	0.81	+1.3
1,926,985	+		PGA1_c18470	0.81	+0.7
1,926,985	+		PGA1_c18470	0.81	+0.9
1,926,985	+		PGA1_c18470	0.81	+1.3
1,926,985	+		PGA1_c18470	0.81	+0.0
1,926,985	+		PGA1_c18470	0.81	+1.0
1,926,985	+		PGA1_c18470	0.81	-0.7
1,926,985	+		PGA1_c18470	0.81	-0.7
1,926,985	+		PGA1_c18470	0.81	-0.0
1,926,985	+		PGA1_c18470	0.81	-1.4
1,926,985	+		PGA1_c18470	0.81	+0.0
1,926,985	+		PGA1_c18470	0.81	-0.4
1,926,985	+		PGA1_c18470	0.81	+0.4
1,926,985	+		PGA1_c18470	0.81	+1.4
1,926,985	+		PGA1_c18470	0.81	-0.4
1,926,985	+		PGA1_c18470	0.81	-0.5
1,926,985	+		PGA1_c18470	0.81	+0.0
1,926,985	+		PGA1_c18470	0.81	+1.4
1,926,985	+		PGA1_c18470	0.81	-0.2
1,926,985	+		PGA1_c18470	0.81	+0.5
1,926,985	+		PGA1_c18470	0.81	+0.4
1,926,990	+		PGA1_c18470	0.83	+0.4
1,926,993	-		PGA1_c18470	0.85	+0.4
1,926,993	-		PGA1_c18470	0.85	+0.6
1,926,993	-		PGA1_c18470	0.85	+0.7
1,926,993	-		PGA1_c18470	0.85	-1.4
1,926,993	-		PGA1_c18470	0.85	+0.6
1,926,993	-		PGA1_c18470	0.85	-1.0
1,926,993	-		PGA1_c18470	0.85	+0.6
1,926,993	-		PGA1_c18470	0.85	+1.7
1,926,993	-		PGA1_c18470	0.85	+1.0
1,926,993	-		PGA1_c18470	0.85	+0.1
1,926,993	-		PGA1_c18470	0.85	-0.1
1,926,993	-		PGA1_c18470	0.85	-1.3
1,926,993	-		PGA1_c18470	0.85	-2.1
1,926,993	-		PGA1_c18470	0.85	-0.6
1,926,993	-		PGA1_c18470	0.85	+0.6
1,926,993	-		PGA1_c18470	0.85	-0.2
1,926,995	+		PGA1_c18470	0.85	+1.3
1,926,998	-		PGA1_c18470	0.87	+0.8
1,927,003	-		PGA1_c18470	0.89	+0.6
1,927,003	-		PGA1_c18470	0.89	-0.6
1,927,004	-		PGA1_c18470	0.89	+2.2
1,927,006	+				+0.8
1,927,006	+				+1.7
1,927,014	+				+1.7
1,927,014	+				+0.1
1,927,014	-				+0.9
1,927,014	-				+0.7
1,927,014	-				+0.5
1,927,014	-				-1.1
1,927,014	-				+2.6
1,927,017	-				-2.2
1,927,028	+				+1.5
1,927,028	-				+1.2
1,927,030	-				+0.9
1,927,036	-				+0.4
1,927,036	-				+0.3
1,927,045	-				+1.8
1,927,045	-				+1.1
1,927,045	-				-0.5
1,927,045	-				+0.9
1,927,047	+				+0.6
1,927,076	+				+0.8
1,927,084	-				-0.8
1,927,110	+				+1.6
1,927,110	+				-0.1
1,927,110	+				-0.2
1,927,110	+				+0.6
1,927,110	+				+0.4
1,927,117	-				+0.4
1,927,118	-				+0.4
1,927,118	-				-0.6
1,927,118	-				+1.0
1,927,118	-				-0.1
1,927,123	+				+1.4
1,927,123	+				-0.1
1,927,130	+				+0.2
1,927,130	+				+1.2
1,927,130	+				+0.3
1,927,130	+				-0.5
1,927,138	-				+0.8
1,927,138	-				-1.2
1,927,138	-				-2.0
1,927,138	-				+0.9
1,927,138	-				+0.8
1,927,145	-				+1.1
1,927,145	-				+0.3
1,927,147	+				+2.6
1,927,147	+				+1.1
1,927,147	+				-1.4
1,927,147	+				-1.3
1,927,147	+				+0.9
1,927,147	+				-0.5
1,927,147	+				+0.8
1,927,153	+				+0.1
1,927,155	-				-0.5
1,927,171	-		PGA1_c18480	0.11	+0.5
1,927,171	-		PGA1_c18480	0.11	+0.4
1,927,171	-		PGA1_c18480	0.11	+0.3
1,927,172	+		PGA1_c18480	0.11	-0.6
1,927,180	-		PGA1_c18480	0.12	+0.7
1,927,180	-		PGA1_c18480	0.12	-1.0
1,927,223	+		PGA1_c18480	0.18	+1.9
1,927,233	-		PGA1_c18480	0.19	+0.2
1,927,233	-		PGA1_c18480	0.19	+0.8
1,927,237	+		PGA1_c18480	0.20	-0.0
1,927,237	+		PGA1_c18480	0.20	-1.0
1,927,237	+		PGA1_c18480	0.20	+0.1
1,927,237	+		PGA1_c18480	0.20	+0.8
1,927,237	+		PGA1_c18480	0.20	+0.6
1,927,237	+		PGA1_c18480	0.20	-0.5
1,927,237	+		PGA1_c18480	0.20	+0.7
1,927,237	+		PGA1_c18480	0.20	+1.8
1,927,237	+		PGA1_c18480	0.20	+0.2
1,927,237	+		PGA1_c18480	0.20	+0.9
1,927,237	+		PGA1_c18480	0.20	+0.5
1,927,237	+		PGA1_c18480	0.20	-0.2
1,927,237	+		PGA1_c18480	0.20	-0.4
1,927,237	+		PGA1_c18480	0.20	-0.6
1,927,245	-		PGA1_c18480	0.21	+0.6
1,927,245	-		PGA1_c18480	0.21	-1.0
1,927,245	-		PGA1_c18480	0.21	+0.3
1,927,245	-		PGA1_c18480	0.21	+1.1
1,927,245	-		PGA1_c18480	0.21	+0.1
1,927,245	-		PGA1_c18480	0.21	-0.1
1,927,245	-		PGA1_c18480	0.21	+0.0
1,927,245	-		PGA1_c18480	0.21	-0.8
1,927,245	-		PGA1_c18480	0.21	+0.1
1,927,245	-		PGA1_c18480	0.21	+1.1
1,927,245	-		PGA1_c18480	0.21	-0.4
1,927,245	-		PGA1_c18480	0.21	+0.5
1,927,245	-		PGA1_c18480	0.21	+0.7
1,927,245	-		PGA1_c18480	0.21	+0.6
1,927,245	-		PGA1_c18480	0.21	+1.9
1,927,245	-		PGA1_c18480	0.21	+0.9
1,927,251	+		PGA1_c18480	0.22	+0.4
1,927,256	+		PGA1_c18480	0.23	+1.5
1,927,256	+		PGA1_c18480	0.23	-0.2
1,927,264	-		PGA1_c18480	0.24	-3.1
1,927,296	-		PGA1_c18480	0.28	-1.2
1,927,296	-		PGA1_c18480	0.28	+1.3
1,927,298	+		PGA1_c18480	0.28	-0.4
1,927,298	+		PGA1_c18480	0.28	-0.2
1,927,298	+		PGA1_c18480	0.28	+0.8
1,927,298	+		PGA1_c18480	0.28	+0.5
1,927,300	-		PGA1_c18480	0.29	-0.2
1,927,326	+		PGA1_c18480	0.32	+1.0
1,927,367	-		PGA1_c18480	0.38	+0.6
1,927,367	-		PGA1_c18480	0.38	+1.4
1,927,397	-		PGA1_c18480	0.42	+0.2
1,927,404	+		PGA1_c18480	0.43	-0.2
1,927,472	-		PGA1_c18480	0.52	-0.4
1,927,472	-		PGA1_c18480	0.52	+0.5
1,927,482	-		PGA1_c18480	0.54	+0.6
1,927,519	+		PGA1_c18480	0.59	+1.6
1,927,521	+		PGA1_c18480	0.59	-0.7
1,927,521	+		PGA1_c18480	0.59	+0.6
1,927,521	+		PGA1_c18480	0.59	-1.1
1,927,529	-		PGA1_c18480	0.60	+0.6
1,927,529	-		PGA1_c18480	0.60	-0.4
1,927,529	-		PGA1_c18480	0.60	+0.5
1,927,529	-		PGA1_c18480	0.60	+1.5
1,927,529	-		PGA1_c18480	0.60	+0.9
1,927,559	+		PGA1_c18480	0.64	-1.1
1,927,559	+		PGA1_c18480	0.64	-2.3
1,927,559	+		PGA1_c18480	0.64	-0.4
1,927,564	+		PGA1_c18480	0.65	-0.4
1,927,564	+		PGA1_c18480	0.65	-1.6
1,927,564	+		PGA1_c18480	0.65	-1.2
1,927,567	-		PGA1_c18480	0.65	+0.6
1,927,567	-		PGA1_c18480	0.65	-1.0
1,927,567	-		PGA1_c18480	0.65	+1.2
1,927,567	-		PGA1_c18480	0.65	+0.5
1,927,567	-		PGA1_c18480	0.65	+1.2
1,927,580	-		PGA1_c18480	0.67	+0.5
1,927,590	-		PGA1_c18480	0.69	+1.1
1,927,590	-		PGA1_c18480	0.69	-1.7
1,927,590	-		PGA1_c18480	0.69	+0.7
1,927,590	-		PGA1_c18480	0.69	-0.2
1,927,594	-		PGA1_c18480	0.69	-1.4
1,927,622	-		PGA1_c18480	0.73	-1.8
1,927,634	-		PGA1_c18480	0.75	+0.4
1,927,656	+		PGA1_c18480	0.78	+0.9
1,927,656	+		PGA1_c18480	0.78	+0.5
1,927,656	+		PGA1_c18480	0.78	+1.6
1,927,656	+		PGA1_c18480	0.78	-3.1
1,927,656	+		PGA1_c18480	0.78	-0.2
1,927,656	+		PGA1_c18480	0.78	+0.6
1,927,656	+		PGA1_c18480	0.78	+0.2
1,927,663	+		PGA1_c18480	0.79	+0.0
1,927,664	+		PGA1_c18480	0.79	-0.7
1,927,664	-		PGA1_c18480	0.79	-0.4
1,927,664	-		PGA1_c18480	0.79	-0.3
1,927,664	-		PGA1_c18480	0.79	-1.4
1,927,664	-		PGA1_c18480	0.79	+0.6
1,927,664	-		PGA1_c18480	0.79	+1.0
1,927,664	-		PGA1_c18480	0.79	-0.2
1,927,664	-		PGA1_c18480	0.79	-0.5
1,927,664	-		PGA1_c18480	0.79	+0.5
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1,927,749	+				+1.0
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1,927,750	-				+1.0
1,927,750	-				-2.1
1,927,750	-				-1.2
1,927,750	-				+0.8
1,927,750	-				+0.3
1,927,750	-				+0.4
1,927,750	-				+0.0
1,927,750	-				-0.7
1,927,750	-				+0.7
1,927,750	-				+0.7
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1,927,785	+				+1.6
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1,927,863	+				+1.0
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1,927,866	-				-1.0
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1,927,890	+				+2.1
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1,927,890	+				+1.1
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1,927,890	+				+0.8
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1,927,898	-				-0.1
1,927,898	-				-0.5
1,927,898	-				-1.7
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1,927,898	-				-0.2
1,927,898	-				-1.2
1,927,898	-				+0.5
1,927,898	-				-0.6
1,927,898	-				-0.6
1,927,898	-				-2.6
1,927,898	-				+0.4
1,927,898	-				+0.5
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1,927,898	-				+0.0
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1,927,901	+				-1.0
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1,927,906	+				+0.8
1,927,907	+				-0.7
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1,927,919	-				-0.1
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1,927,934	+				+1.0
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1,927,948	+				-1.7
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