Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00750 and BWI76_RS00755 are separated by 9 nucleotides BWI76_RS00755 and BWI76_RS00760 are separated by 91 nucleotides
BWI76_RS00750: BWI76_RS00750 - ATP-dependent protease ATP-binding subunit HslU, at 152,271 to 153,605
_RS00750
BWI76_RS00755: BWI76_RS00755 - ATP-dependent protease subunit HslV, at 153,615 to 154,145
_RS00755
BWI76_RS00760: BWI76_RS00760 - cell division protein FtsN, at 154,237 to 155,211
_RS00760
Position (kb) 153
154
155 Strain fitness (log2 ratio) -2
-1
0
1 at 152.745 kb on - strand, within BWI76_RS00750 at 152.784 kb on - strand, within BWI76_RS00750 at 152.931 kb on - strand, within BWI76_RS00750 at 153.078 kb on - strand, within BWI76_RS00750 at 153.484 kb on - strand at 153.489 kb on - strand at 153.823 kb on + strand, within BWI76_RS00755 at 153.967 kb on + strand, within BWI76_RS00755 at 154.069 kb on + strand, within BWI76_RS00755 at 154.077 kb on - strand, within BWI76_RS00755 at 154.082 kb on - strand, within BWI76_RS00755 at 154.114 kb on - strand at 154.369 kb on - strand, within BWI76_RS00760 at 154.417 kb on - strand, within BWI76_RS00760 at 154.532 kb on + strand, within BWI76_RS00760 at 154.540 kb on - strand, within BWI76_RS00760 at 154.540 kb on - strand, within BWI76_RS00760 at 154.540 kb on - strand, within BWI76_RS00760 at 154.565 kb on - strand, within BWI76_RS00760
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 152,745 - BWI76_RS00750 0.36 -0.1 152,784 - BWI76_RS00750 0.38 -1.5 152,931 - BWI76_RS00750 0.49 +0.0 153,078 - BWI76_RS00750 0.60 -0.9 153,484 - -1.9 153,489 - +0.7 153,823 + BWI76_RS00755 0.39 -1.2 153,967 + BWI76_RS00755 0.66 -1.1 154,069 + BWI76_RS00755 0.85 -0.8 154,077 - BWI76_RS00755 0.87 -0.8 154,082 - BWI76_RS00755 0.88 -0.9 154,114 - -1.0 154,369 - BWI76_RS00760 0.14 -1.0 154,417 - BWI76_RS00760 0.18 -0.2 154,532 + BWI76_RS00760 0.30 -0.0 154,540 - BWI76_RS00760 0.31 -0.2 154,540 - BWI76_RS00760 0.31 -0.2 154,540 - BWI76_RS00760 0.31 -0.1 154,565 - BWI76_RS00760 0.34 -0.0
Or see this region's nucleotide sequence