Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS21025

Experiment: MRS + carbenicillin Time24hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MRS + carbenicillin Time24hr
1,790,059	+		BBR_RS17870	0.17	+0.2
1,790,071	+		BBR_RS17870	0.18	+1.0
1,790,089	-		BBR_RS17870	0.19	+0.6
1,790,165	+		BBR_RS17870	0.25	-1.5
1,790,179	+		BBR_RS17870	0.27	-3.5
1,790,208	-		BBR_RS17870	0.29	+1.5
1,790,237	+		BBR_RS17870	0.31	+1.6
1,790,245	-		BBR_RS17870	0.32	+1.8
1,790,257	+		BBR_RS17870	0.33	+0.7
1,790,257	+		BBR_RS17870	0.33	-0.7
1,790,257	+		BBR_RS17870	0.33	-0.2
1,790,257	+		BBR_RS17870	0.33	+0.2
1,790,257	+		BBR_RS17870	0.33	+0.3
1,790,257	+		BBR_RS17870	0.33	-0.8
1,790,257	+		BBR_RS17870	0.33	+1.6
1,790,257	+		BBR_RS17870	0.33	-0.4
1,790,257	+		BBR_RS17870	0.33	-0.5
1,790,257	+		BBR_RS17870	0.33	+2.4
1,790,257	+		BBR_RS17870	0.33	-1.8
1,790,257	+		BBR_RS17870	0.33	-0.0
1,790,257	+		BBR_RS17870	0.33	-0.7
1,790,265	-		BBR_RS17870	0.34	+2.3
1,790,265	-		BBR_RS17870	0.34	+0.4
1,790,265	-		BBR_RS17870	0.34	-0.6
1,790,265	-		BBR_RS17870	0.34	+1.5
1,790,265	-		BBR_RS17870	0.34	-0.4
1,790,265	-		BBR_RS17870	0.34	+2.0
1,790,265	-		BBR_RS17870	0.34	-0.2
1,790,265	-		BBR_RS17870	0.34	+1.7
1,790,265	-		BBR_RS17870	0.34	-2.1
1,790,265	-		BBR_RS17870	0.34	+1.7
1,790,267	-		BBR_RS17870	0.34	+1.2
1,790,272	+		BBR_RS17870	0.34	+0.2
1,790,272	+		BBR_RS17870	0.34	-2.0
1,790,275	-		BBR_RS17870	0.35	+1.1
1,790,285	+		BBR_RS17870	0.35	-1.6
1,790,285	-		BBR_RS17870	0.35	+0.5
1,790,285	-		BBR_RS17870	0.35	-0.2
1,790,289	+		BBR_RS17870	0.36	-1.0
1,790,293	-		BBR_RS17870	0.36	-0.5
1,790,322	+		BBR_RS17870	0.39	-0.6
1,790,331	-		BBR_RS17870	0.39	-0.0
1,790,334	+		BBR_RS17870	0.40	+0.1
1,790,337	-		BBR_RS17870	0.40	-0.5
1,790,344	+		BBR_RS17870	0.40	+1.5
1,790,344	+		BBR_RS17870	0.40	-0.0
1,790,344	+		BBR_RS17870	0.40	-0.5
1,790,344	+		BBR_RS17870	0.40	+1.5
1,790,344	+		BBR_RS17870	0.40	+0.6
1,790,344	+		BBR_RS17870	0.40	-3.2
1,790,344	+		BBR_RS17870	0.40	+1.8
1,790,344	+		BBR_RS17870	0.40	-0.6
1,790,344	+		BBR_RS17870	0.40	-0.8
1,790,352	-		BBR_RS17870	0.41	+0.7
1,790,358	+		BBR_RS17870	0.41	-1.2
1,790,407	+		BBR_RS17870	0.46	+1.8
1,790,408	-		BBR_RS17870	0.46	-0.5
1,790,413	-		BBR_RS17870	0.46	+1.3
1,790,425	+		BBR_RS17870	0.47	-1.1
1,790,435	+		BBR_RS17870	0.48	-0.1
1,790,450	+		BBR_RS17870	0.49	-1.7
1,790,461	+		BBR_RS17870	0.50	-1.0
1,790,466	+		BBR_RS17870	0.51	+3.7
1,790,471	+		BBR_RS17870	0.51	+0.1
1,790,471	+		BBR_RS17870	0.51	-0.3
1,790,479	-		BBR_RS17870	0.52	+2.5
1,790,479	-		BBR_RS17870	0.52	-0.4
1,790,486	-		BBR_RS17870	0.52	-0.4
1,790,498	-		BBR_RS17870	0.53	-0.3
1,790,509	-		BBR_RS17870	0.54	-0.1
1,790,509	-		BBR_RS17870	0.54	-1.0
1,790,510	-		BBR_RS17870	0.54	+3.1
1,790,575	-		BBR_RS17870	0.60	+0.4
1,790,594	-		BBR_RS17870	0.61	+1.3
1,790,638	+		BBR_RS17870	0.65	+0.4
1,790,638	+		BBR_RS17870	0.65	-1.9
1,790,646	-		BBR_RS17870	0.66	+0.9
1,790,646	-		BBR_RS17870	0.66	+2.1
1,790,677	+		BBR_RS17870	0.68	+1.3
1,790,685	-		BBR_RS17870	0.69	-0.7
1,790,721	-		BBR_RS17870	0.72	+1.2
1,790,743	-		BBR_RS17870	0.74	-1.5
1,790,747	+		BBR_RS17870	0.74	-1.2
1,790,755	+		BBR_RS17870	0.75	+0.5
1,790,763	-		BBR_RS17870	0.75	-1.3
1,790,763	-		BBR_RS17870	0.75	+1.1
1,790,763	-		BBR_RS17870	0.75	-0.5
1,790,763	-		BBR_RS17870	0.75	+0.7
1,790,776	+		BBR_RS17870	0.76	-3.5
1,790,808	-		BBR_RS17870	0.79	-2.2
1,790,810	+		BBR_RS17870	0.79	+1.0
1,790,814	+		BBR_RS17870	0.80	+1.7
1,790,827	-		BBR_RS17870	0.81	-0.1
1,790,892	+		BBR_RS17870	0.86	-0.1
1,790,892	-		BBR_RS17870	0.86	-1.5
1,790,899	+		BBR_RS17870	0.87	-0.2
1,790,954	+				+2.9
1,790,962	-				+3.1
1,790,962	-				+1.1
1,790,962	-				-1.1
1,790,962	-				-0.3
1,791,063	+				+0.8
1,791,068	+				+1.5
1,791,071	-				-2.1
1,791,089	-				-0.6
1,791,089	-				-2.2
1,791,096	-		BBR_RS21025	0.12	-1.1
1,791,179	+		BBR_RS21025	0.36	+0.3
1,791,187	-		BBR_RS21025	0.38	+1.7
1,791,195	-		BBR_RS21025	0.41	+1.6
1,791,197	-		BBR_RS21025	0.41	-0.9
1,791,200	+		BBR_RS21025	0.42	-1.4
1,791,223	+		BBR_RS21025	0.49	-1.0
1,791,243	-		BBR_RS21025	0.55	+1.5
1,791,246	+		BBR_RS21025	0.56	-0.4
1,791,272	+		BBR_RS21025	0.63	-0.6
1,791,278	-		BBR_RS21025	0.65	-2.5
1,791,301	-		BBR_RS21025	0.72	+0.8
1,791,301	-		BBR_RS21025	0.72	-2.9
1,791,301	-		BBR_RS21025	0.72	-1.5
1,791,370	-				+2.3
1,791,372	+				-1.5
1,791,372	+				+0.3
1,791,372	+				+0.2
1,791,372	+				+2.9
1,791,372	+				+0.6
1,791,372	+				-1.2
1,791,372	+				+2.8
1,791,372	+				-0.0
1,791,380	-				-0.5
1,791,380	-				-0.4
1,791,380	-				-0.3
1,791,380	-				+1.9
1,791,380	-				-0.2
1,791,380	-				-0.5
1,791,380	-				+0.7
1,791,380	-				+0.0
1,791,380	-				+0.5
1,791,380	-				+1.1
1,791,380	-				+0.4
1,791,396	+				+3.3
1,791,416	+				-0.2
1,791,439	-				+1.8
1,791,451	+				-0.2
1,791,472	+				+0.8
1,791,472	+				+1.8
1,791,472	+				+0.9
1,791,504	-				+1.5
1,791,505	-				-0.6
1,791,602	-		BBR_RS17875	0.12	-1.5
1,791,602	-		BBR_RS17875	0.12	+2.7
1,791,619	-		BBR_RS17875	0.14	-0.0
1,791,640	-		BBR_RS17875	0.16	+0.5
1,791,645	+		BBR_RS17875	0.16	-1.1
1,791,657	+		BBR_RS17875	0.17	+2.3
1,791,738	-		BBR_RS17875	0.24	+1.1
1,791,749	-		BBR_RS17875	0.25	+0.8
1,791,753	-		BBR_RS17875	0.25	-1.2
1,791,763	-		BBR_RS17875	0.26	-0.9
1,791,809	+		BBR_RS17875	0.30	+0.1
1,791,817	-		BBR_RS17875	0.30	-1.8
1,791,817	-		BBR_RS17875	0.30	+2.0
1,791,842	-		BBR_RS17875	0.32	-0.9
1,791,868	+		BBR_RS17875	0.34	-0.5
1,791,868	+		BBR_RS17875	0.34	-1.9
1,791,868	+		BBR_RS17875	0.34	-2.2
1,791,868	+		BBR_RS17875	0.34	-2.1
1,791,868	+		BBR_RS17875	0.34	+2.8
1,791,876	-		BBR_RS17875	0.35	-0.5
1,791,890	-		BBR_RS17875	0.36	-1.3
1,791,925	+		BBR_RS17875	0.39	+0.5
1,791,931	-		BBR_RS17875	0.40	-0.6
1,792,035	-		BBR_RS17875	0.48	-0.7
1,792,035	-		BBR_RS17875	0.48	-1.9
1,792,056	+		BBR_RS17875	0.50	+2.5
1,792,059	-		BBR_RS17875	0.50	+1.8
1,792,060	-		BBR_RS17875	0.50	-1.5
1,792,065	-		BBR_RS17875	0.51	+0.3
1,792,067	-		BBR_RS17875	0.51	+0.9
1,792,075	-		BBR_RS17875	0.52	-2.0
1,792,082	-		BBR_RS17875	0.52	+0.4
1,792,249	+		BBR_RS17875	0.66	-0.2
1,792,259	-		BBR_RS17875	0.67	+3.0
1,792,265	+		BBR_RS17875	0.67	+0.9
1,792,265	+		BBR_RS17875	0.67	-0.2
1,792,302	-		BBR_RS17875	0.70	+1.0
1,792,304	-		BBR_RS17875	0.71	-1.7
1,792,336	-		BBR_RS17875	0.73	-3.0
1,792,336	-		BBR_RS17875	0.73	+0.6
1,792,336	-		BBR_RS17875	0.73	+1.7
1,792,336	-		BBR_RS17875	0.73	-0.9
1,792,346	-		BBR_RS17875	0.74	-0.0
1,792,346	-		BBR_RS17875	0.74	-0.6
1,792,371	-		BBR_RS17875	0.76	+2.8
1,792,393	-		BBR_RS17875	0.78	+1.1