Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13155

Experiment: MRS + carbenicillin Time24hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13150 and BBR_RS13155 are separated by 113 nucleotidesBBR_RS13155 and BBR_RS13160 are separated by 123 nucleotidesBBR_RS13160 and BBR_RS13165 are separated by 56 nucleotides BBR_RS13150: BBR_RS13150 - DNA helicase RecQ, at 725,884 to 727,803 _RS13150 BBR_RS13155: BBR_RS13155 - S-ribosylhomocysteine lyase, at 727,917 to 728,411 _RS13155 BBR_RS13160: BBR_RS13160 - serine O-acetyltransferase, at 728,535 to 729,077 _RS13160 BBR_RS13165: BBR_RS13165 - amino acid permease, at 729,134 to 730,591 _RS13165 Position (kb) 727 728 729Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 726.925 kb on + strand, within BBR_RS13150at 726.925 kb on + strand, within BBR_RS13150at 726.925 kb on - strand, within BBR_RS13150at 726.933 kb on - strand, within BBR_RS13150at 726.951 kb on + strand, within BBR_RS13150at 726.954 kb on + strand, within BBR_RS13150at 726.959 kb on + strand, within BBR_RS13150at 727.104 kb on - strand, within BBR_RS13150at 727.180 kb on - strand, within BBR_RS13150at 727.269 kb on - strand, within BBR_RS13150at 727.278 kb on + strand, within BBR_RS13150at 727.283 kb on + strand, within BBR_RS13150at 727.291 kb on - strand, within BBR_RS13150at 727.291 kb on - strand, within BBR_RS13150at 727.319 kb on - strand, within BBR_RS13150at 727.319 kb on - strand, within BBR_RS13150at 727.319 kb on - strand, within BBR_RS13150at 727.508 kb on - strand, within BBR_RS13150at 727.537 kb on - strand, within BBR_RS13150at 727.551 kb on - strand, within BBR_RS13150at 727.558 kb on - strand, within BBR_RS13150at 727.600 kb on - strand, within BBR_RS13150at 727.720 kb on + strandat 727.721 kb on + strandat 727.736 kb on + strandat 727.840 kb on + strandat 727.840 kb on + strandat 727.863 kb on - strandat 727.871 kb on + strandat 727.871 kb on + strandat 727.871 kb on + strandat 727.933 kb on - strandat 727.960 kb on + strandat 727.964 kb on + strandat 727.968 kb on - strand, within BBR_RS13155at 727.976 kb on + strand, within BBR_RS13155at 727.976 kb on + strand, within BBR_RS13155at 728.096 kb on + strand, within BBR_RS13155at 728.101 kb on + strand, within BBR_RS13155at 728.101 kb on + strand, within BBR_RS13155at 728.101 kb on + strand, within BBR_RS13155at 728.111 kb on + strand, within BBR_RS13155at 728.113 kb on + strand, within BBR_RS13155at 728.195 kb on + strand, within BBR_RS13155at 728.212 kb on + strand, within BBR_RS13155at 728.212 kb on + strand, within BBR_RS13155at 728.233 kb on - strand, within BBR_RS13155at 728.269 kb on - strand, within BBR_RS13155at 728.283 kb on - strand, within BBR_RS13155at 728.295 kb on + strand, within BBR_RS13155at 728.303 kb on + strand, within BBR_RS13155at 728.308 kb on + strand, within BBR_RS13155at 728.345 kb on + strand, within BBR_RS13155at 728.353 kb on - strand, within BBR_RS13155at 728.358 kb on - strand, within BBR_RS13155at 728.405 kb on + strandat 728.413 kb on - strandat 728.423 kb on - strandat 728.423 kb on - strandat 728.434 kb on - strandat 728.441 kb on - strandat 728.443 kb on - strandat 728.468 kb on - strandat 728.470 kb on + strandat 728.503 kb on - strandat 728.529 kb on - strandat 728.533 kb on + strandat 728.569 kb on - strandat 728.618 kb on + strand, within BBR_RS13160at 728.640 kb on - strand, within BBR_RS13160at 728.640 kb on - strand, within BBR_RS13160at 728.650 kb on - strand, within BBR_RS13160at 728.673 kb on - strand, within BBR_RS13160at 728.681 kb on - strand, within BBR_RS13160at 728.681 kb on - strand, within BBR_RS13160at 728.713 kb on + strand, within BBR_RS13160at 728.721 kb on - strand, within BBR_RS13160at 728.728 kb on - strand, within BBR_RS13160at 728.730 kb on + strand, within BBR_RS13160at 728.730 kb on + strand, within BBR_RS13160at 728.736 kb on - strand, within BBR_RS13160at 728.736 kb on - strand, within BBR_RS13160at 728.738 kb on - strand, within BBR_RS13160at 728.775 kb on - strand, within BBR_RS13160at 728.782 kb on + strand, within BBR_RS13160at 728.793 kb on + strand, within BBR_RS13160at 728.816 kb on + strand, within BBR_RS13160at 728.895 kb on + strand, within BBR_RS13160at 728.942 kb on + strand, within BBR_RS13160at 728.960 kb on + strand, within BBR_RS13160at 728.968 kb on - strand, within BBR_RS13160at 728.968 kb on - strand, within BBR_RS13160at 728.968 kb on - strand, within BBR_RS13160at 729.110 kb on - strandat 729.132 kb on + strandat 729.132 kb on + strandat 729.140 kb on - strandat 729.150 kb on + strandat 729.158 kb on - strandat 729.170 kb on - strandat 729.170 kb on - strandat 729.262 kb on - strandat 729.296 kb on + strand, within BBR_RS13165at 729.301 kb on - strand, within BBR_RS13165at 729.313 kb on - strand, within BBR_RS13165at 729.328 kb on + strand, within BBR_RS13165at 729.328 kb on + strand, within BBR_RS13165at 729.336 kb on - strand, within BBR_RS13165at 729.366 kb on + strand, within BBR_RS13165

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Per-strain Table

Position Strand Gene LocusTag Fraction MRS + carbenicillin Time24hr
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726,925 + BBR_RS13150 0.54 -0.4
726,925 + BBR_RS13150 0.54 +3.2
726,925 - BBR_RS13150 0.54 +0.8
726,933 - BBR_RS13150 0.55 -0.9
726,951 + BBR_RS13150 0.56 +2.2
726,954 + BBR_RS13150 0.56 +0.8
726,959 + BBR_RS13150 0.56 +0.1
727,104 - BBR_RS13150 0.64 -2.0
727,180 - BBR_RS13150 0.68 -0.6
727,269 - BBR_RS13150 0.72 -0.3
727,278 + BBR_RS13150 0.73 -1.4
727,283 + BBR_RS13150 0.73 +0.7
727,291 - BBR_RS13150 0.73 -0.4
727,291 - BBR_RS13150 0.73 +0.3
727,319 - BBR_RS13150 0.75 -0.9
727,319 - BBR_RS13150 0.75 -1.0
727,319 - BBR_RS13150 0.75 -0.5
727,508 - BBR_RS13150 0.85 +0.1
727,537 - BBR_RS13150 0.86 +1.5
727,551 - BBR_RS13150 0.87 +0.5
727,558 - BBR_RS13150 0.87 -0.5
727,600 - BBR_RS13150 0.89 +3.0
727,720 + +0.8
727,721 + -1.3
727,736 + -1.1
727,840 + -1.2
727,840 + +0.1
727,863 - +0.5
727,871 + +1.5
727,871 + +0.4
727,871 + +0.3
727,933 - -1.5
727,960 + -1.2
727,964 + +2.7
727,968 - BBR_RS13155 0.10 +0.7
727,976 + BBR_RS13155 0.12 +0.5
727,976 + BBR_RS13155 0.12 -1.8
728,096 + BBR_RS13155 0.36 +0.5
728,101 + BBR_RS13155 0.37 -0.9
728,101 + BBR_RS13155 0.37 -0.7
728,101 + BBR_RS13155 0.37 -2.0
728,111 + BBR_RS13155 0.39 +0.5
728,113 + BBR_RS13155 0.40 -2.2
728,195 + BBR_RS13155 0.56 -1.5
728,212 + BBR_RS13155 0.60 -2.5
728,212 + BBR_RS13155 0.60 -1.3
728,233 - BBR_RS13155 0.64 -1.5
728,269 - BBR_RS13155 0.71 -1.5
728,283 - BBR_RS13155 0.74 +0.2
728,295 + BBR_RS13155 0.76 +0.1
728,303 + BBR_RS13155 0.78 -1.5
728,308 + BBR_RS13155 0.79 -0.9
728,345 + BBR_RS13155 0.86 +0.3
728,353 - BBR_RS13155 0.88 -3.4
728,358 - BBR_RS13155 0.89 -1.5
728,405 + +0.6
728,413 - -1.5
728,423 - -0.3
728,423 - +1.3
728,434 - +1.5
728,441 - -1.5
728,443 - -3.3
728,468 - +2.7
728,470 + +0.5
728,503 - +0.5
728,529 - +1.7
728,533 + -4.7
728,569 - +2.0
728,618 + BBR_RS13160 0.15 +0.1
728,640 - BBR_RS13160 0.19 -1.0
728,640 - BBR_RS13160 0.19 +0.3
728,650 - BBR_RS13160 0.21 -0.7
728,673 - BBR_RS13160 0.25 -1.5
728,681 - BBR_RS13160 0.27 +2.1
728,681 - BBR_RS13160 0.27 +0.4
728,713 + BBR_RS13160 0.33 +0.1
728,721 - BBR_RS13160 0.34 +2.0
728,728 - BBR_RS13160 0.36 +2.2
728,730 + BBR_RS13160 0.36 +2.6
728,730 + BBR_RS13160 0.36 -0.9
728,736 - BBR_RS13160 0.37 -0.1
728,736 - BBR_RS13160 0.37 +1.0
728,738 - BBR_RS13160 0.37 -1.5
728,775 - BBR_RS13160 0.44 +2.8
728,782 + BBR_RS13160 0.45 +1.4
728,793 + BBR_RS13160 0.48 -0.4
728,816 + BBR_RS13160 0.52 -2.9
728,895 + BBR_RS13160 0.66 -0.7
728,942 + BBR_RS13160 0.75 -2.0
728,960 + BBR_RS13160 0.78 -0.4
728,968 - BBR_RS13160 0.80 -1.5
728,968 - BBR_RS13160 0.80 +0.7
728,968 - BBR_RS13160 0.80 +2.7
729,110 - -1.2
729,132 + -0.5
729,132 + +2.5
729,140 - -0.6
729,150 + +0.8
729,158 - -0.5
729,170 - -1.5
729,170 - +0.1
729,262 - -2.6
729,296 + BBR_RS13165 0.11 -0.3
729,301 - BBR_RS13165 0.11 -0.2
729,313 - BBR_RS13165 0.12 +0.0
729,328 + BBR_RS13165 0.13 -0.6
729,328 + BBR_RS13165 0.13 -1.1
729,336 - BBR_RS13165 0.14 +2.3
729,366 + BBR_RS13165 0.16 -0.2

Or see this region's nucleotide sequence