Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_B2637

Experiment: BG11 with Fusidic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BG11 with Fusidic 0.25 mg/ml
322	+		Synpcc7942_B2615	0.78	-0.1
360	+		Synpcc7942_B2615	0.89	+0.1
360	+		Synpcc7942_B2615	0.89	+0.1
360	+		Synpcc7942_B2615	0.89	-0.3
373	+				+2.2
373	+				+0.9
373	+				-0.4
373	+				+0.3
373	+				-0.6
373	+				+0.2
373	+				-0.3
373	+				-0.3
373	+				+0.3
373	+				+0.8
381	-				+0.6
381	-				-1.5
381	-				-1.8
381	-				+0.1
381	-				-0.7
381	-				+0.8
396	+				-0.2
401	+				+0.9
401	+				+0.1
401	+				-1.0
401	+				-0.9
401	+				+1.4
404	-				+1.5
404	-				-0.1
407	-				-0.3
409	-				-0.0
409	-				+0.6
409	-				+0.3
414	-				-0.9
414	-				-0.2
414	-				+0.6
431	+				-0.1
495	+				-0.4
495	+				+0.6
495	+				+0.6
495	+				+0.0
510	+				-0.3
512	+				+0.2
514	+				+1.1
565	-				-1.5
601	-	parB	Synpcc7942_B2626	0.13	-0.2
651	+	parB	Synpcc7942_B2626	0.19	-2.5
680	+	parB	Synpcc7942_B2626	0.22	-0.8
748	+	parB	Synpcc7942_B2626	0.30	-0.9
756	-	parB	Synpcc7942_B2626	0.31	-0.0
855	+	parB	Synpcc7942_B2626	0.43	-1.4
877	-	parB	Synpcc7942_B2626	0.46	-0.7
1,007	+	parB	Synpcc7942_B2626	0.62	-1.0
1,192	-	parB	Synpcc7942_B2626	0.84	-1.7
1,218	+	parB	Synpcc7942_B2626	0.87	-1.8
1,293	-				-0.4
1,293	-				-0.4
1,295	+				-0.3
1,303	-				+0.2
1,340	-				-0.4
1,362	-				-1.0
1,380	+	parA	Synpcc7942_B2637	0.10	-0.2
1,380	+	parA	Synpcc7942_B2637	0.10	-0.4
1,382	-	parA	Synpcc7942_B2637	0.10	+0.2
1,435	+	parA	Synpcc7942_B2637	0.19	-0.3
1,473	+	parA	Synpcc7942_B2637	0.25	-1.2
1,514	+	parA	Synpcc7942_B2637	0.32	-1.7
1,516	-				+0.6
1,567	+	parA	Synpcc7942_B2637	0.41	-1.0
1,573	-	parA	Synpcc7942_B2637	0.42	-0.4
1,630	+	parA	Synpcc7942_B2637	0.51	-2.9
1,643	-	parA	Synpcc7942_B2637	0.53	-0.4
1,657	-	parA	Synpcc7942_B2637	0.55	-1.2
1,678	-	parA	Synpcc7942_B2637	0.59	-1.2
1,691	-	parA	Synpcc7942_B2637	0.61	-0.4
1,710	-	parA	Synpcc7942_B2637	0.64	-0.4
1,710	-				+0.2
1,756	+	parA	Synpcc7942_B2637	0.72	-0.7
1,756	+	parA	Synpcc7942_B2637	0.72	+0.2
1,761	+	parA	Synpcc7942_B2637	0.72	-0.2
1,769	-	parA	Synpcc7942_B2637	0.74	+0.3
1,770	+	parA	Synpcc7942_B2637	0.74	-0.4
1,771	-	parA	Synpcc7942_B2637	0.74	-0.7
1,820	+	parA	Synpcc7942_B2637	0.82	-1.9
1,852	+	parA	Synpcc7942_B2637	0.87	-1.5
1,852	+	parA	Synpcc7942_B2637	0.87	-0.7
1,878	+				-0.4
1,878	+				-1.2
1,888	+				+0.2
1,913	+				-0.3
1,921	-				-0.3
1,923	+				+0.6
1,923	+				+0.7
1,923	+				+0.9
1,924	+				+0.2
1,931	-				-0.4
1,931	-				-0.8
1,935	+				+0.9
1,935	+				-0.4
1,935	+				-0.4
1,935	+				+1.7
1,936	+				+0.0
1,936	+				-0.5
1,936	+				-1.5
1,936	+				+1.2
1,936	+				-1.2
1,936	+				-0.7
1,936	+				-2.3
1,943	-				+1.2
1,943	-				+1.1
1,944	-				-0.8
1,944	-				-2.4
1,944	-				-2.4
1,944	-				+0.8
1,944	-				+1.2
1,960	+				-0.3
1,968	-				-0.2
1,972	+				+0.5
1,973	+				+1.6
1,979	+				-1.4
1,979	+				-0.0
1,979	+				+0.2
1,980	-				-0.1
1,981	-				-0.4
1,987	-				+1.7
1,999	+				-0.7
1,999	+				-0.4
1,999	+				-0.8
1,999	+				+1.1
1,999	+				+1.4
1,999	+				+0.1
2,005	-				+0.8
2,005	-				-0.3
2,007	-				-0.7
2,007	-				+0.3
2,007	-				-1.0
2,007	-				+0.3
2,007	-				-0.8
2,007	-				+0.2
2,007	-				+1.2
2,024	+				-1.1
2,024	+				-0.7
2,024	+				-1.1
2,037	+				+0.2
2,058	-				-0.9
2,311	+				+0.6
2,331	-				+0.5
2,332	-				+2.2
2,334	+				+1.4
2,357	-				-0.4
2,359	-				-0.5
2,364	+				+0.4
2,371	-				+0.7
2,378	+				+0.2
2,378	+				+0.0
2,378	+				+0.0
2,379	-	septT2	Synpcc7942_B2659	0.10	+1.7
2,386	-	septT2	Synpcc7942_B2659	0.12	-0.5
2,386	-	septT2	Synpcc7942_B2659	0.12	-0.1
2,386	-	septT2	Synpcc7942_B2659	0.12	+0.2
2,407	+	septT2	Synpcc7942_B2659	0.17	+0.3
2,407	+	septT2	Synpcc7942_B2659	0.17	-0.6
2,407	+	septT2	Synpcc7942_B2659	0.17	-0.8
2,407	+	septT2	Synpcc7942_B2659	0.17	-0.1
2,415	-	septT2	Synpcc7942_B2659	0.20	-0.8
2,417	+				+1.2
2,433	-	septT2	Synpcc7942_B2659	0.24	+3.3
2,444	-	septT2	Synpcc7942_B2659	0.27	-0.3
2,446	+	septT2	Synpcc7942_B2659	0.28	-0.5
2,446	+	septT2	Synpcc7942_B2659	0.28	-0.9
2,451	+	septT2	Synpcc7942_B2659	0.29	-0.4
2,454	-	septT2	Synpcc7942_B2659	0.30	-1.2
2,454	-	septT2	Synpcc7942_B2659	0.30	+0.0
2,455	+	septT2	Synpcc7942_B2659	0.30	-0.6
2,459	-	septT2	Synpcc7942_B2659	0.31	+0.4
2,461	+	septT2	Synpcc7942_B2659	0.32	-3.0
2,469	+				-0.8
2,494	-				+1.2
2,494	-	septT2	Synpcc7942_B2659	0.40	-0.4
2,494	-	septT2	Synpcc7942_B2659	0.40	+1.9
2,494	-	septT2	Synpcc7942_B2659	0.40	+0.1
2,514	+	septT2	Synpcc7942_B2659	0.45	+0.0
2,519	+	septT2	Synpcc7942_B2659	0.47	+0.0
2,569	+	septT2	Synpcc7942_B2659	0.60	+0.5
2,569	+	septT2	Synpcc7942_B2659	0.60	-1.3
2,569	+	septT2	Synpcc7942_B2659	0.60	+1.7
2,569	-	septT2	Synpcc7942_B2659	0.60	-1.1
2,571	+	septT2	Synpcc7942_B2659	0.60	+0.5
2,571	+	septT2	Synpcc7942_B2659	0.60	+1.2
2,577	-	septT2	Synpcc7942_B2659	0.62	-0.6
2,581	+	septT2	Synpcc7942_B2659	0.63	+0.2
2,589	-	septT2	Synpcc7942_B2659	0.65	-0.3
2,593	+	septT2	Synpcc7942_B2659	0.66	+1.2
2,616	-	septT2	Synpcc7942_B2659	0.72	+1.9
2,618	-	septT2	Synpcc7942_B2659	0.72	+0.6
2,633	+	septT2	Synpcc7942_B2659	0.76	-1.0
2,642	-	septT2	Synpcc7942_B2659	0.79	-1.1
2,662	+	septT2	Synpcc7942_B2659	0.84	-0.6
2,664	+	septT2	Synpcc7942_B2659	0.84	+0.9
2,670	-	septT2	Synpcc7942_B2659	0.86	-0.0
2,671	-	septT2	Synpcc7942_B2659	0.86	-0.6
2,672	+	septT2	Synpcc7942_B2659	0.86	-2.2
2,672	+	septT2	Synpcc7942_B2659	0.86	+0.0
2,672	-	septT2	Synpcc7942_B2659	0.86	-0.5
2,672	-	septT2	Synpcc7942_B2659	0.86	+1.2
2,672	-	septT2	Synpcc7942_B2659	0.86	-1.8
2,672	-	septT2	Synpcc7942_B2659	0.86	-0.1
2,672	-	septT2	Synpcc7942_B2659	0.86	-0.1
2,680	-	septT2	Synpcc7942_B2659	0.89	-0.7
2,680	-	septT2	Synpcc7942_B2659	0.89	+0.5
2,680	-	septT2	Synpcc7942_B2659	0.89	+0.3
2,688	+				+0.4
2,689	+				-0.4
2,697	-				+0.9
2,697	-				-0.6
2,697	-				-0.4
2,697	-				+0.2
2,698	+				+1.6
2,699	+				-0.8
2,699	+				+0.5
2,699	+				-0.7
2,707	-				-0.3
2,707	-				-1.9
2,707	-				+0.1
2,739	+				-0.9
2,739	+				-0.1
2,740	+				-0.7
2,740	+				-1.8
2,741	+				-0.4
2,748	-				-2.1
2,783	+		Synpcc7942_B2654	0.18	-1.8
2,849	+		Synpcc7942_B2654	0.37	-1.5
2,857	-		Synpcc7942_B2654	0.39	-0.1
2,857	-		Synpcc7942_B2654	0.39	-0.0
2,863	-		Synpcc7942_B2654	0.41	-1.8
2,883	+		Synpcc7942_B2654	0.46	-0.5
2,887	+		Synpcc7942_B2654	0.48	-1.3
2,890	-		Synpcc7942_B2654	0.48	-0.2
2,897	+		Synpcc7942_B2654	0.50	-0.7
2,913	-		Synpcc7942_B2654	0.55	-0.8
2,915	+		Synpcc7942_B2654	0.56	+0.6
2,924	+		Synpcc7942_B2654	0.58	+0.2
2,924	+		Synpcc7942_B2654	0.58	+0.2