Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1134

Experiment: BG11 with Fusidic 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1133 and Synpcc7942_1134 are separated by 94 nucleotides Synpcc7942_1133: Synpcc7942_1133 - bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39, at 1,153,415 to 1,155,559 _1133 Synpcc7942_1134: Synpcc7942_1134 - hypothetical protein, at 1,155,654 to 1,155,962 _1134 Position (kb) 1155 1156Strain fitness (log2 ratio) -2 -1 0 1at 1154.780 kb on + strand, within Synpcc7942_1133at 1154.895 kb on - strand, within Synpcc7942_1133at 1155.206 kb on - strand, within Synpcc7942_1133at 1155.235 kb on + strand, within Synpcc7942_1133at 1155.290 kb on + strand, within Synpcc7942_1133at 1155.315 kb on + strand, within Synpcc7942_1133at 1155.407 kb on - strandat 1155.521 kb on - strandat 1155.523 kb on + strandat 1155.524 kb on - strandat 1155.612 kb on - strandat 1155.622 kb on - strandat 1155.713 kb on + strand, within Synpcc7942_1134at 1155.727 kb on + strand, within Synpcc7942_1134at 1155.744 kb on + strand, within Synpcc7942_1134at 1156.053 kb on + strandat 1156.053 kb on + strandat 1156.053 kb on + strandat 1156.063 kb on + strandat 1156.291 kb on - strandat 1156.406 kb on + strandat 1156.445 kb on + strandat 1156.453 kb on - strandat 1156.453 kb on - strandat 1156.453 kb on - strandat 1156.521 kb on - strandat 1156.534 kb on - strandat 1156.606 kb on + strandat 1156.649 kb on + strandat 1156.739 kb on - strandat 1156.745 kb on + strandat 1156.746 kb on + strandat 1156.765 kb on + strandat 1156.783 kb on - strandat 1156.873 kb on - strandat 1156.879 kb on - strandat 1156.894 kb on + strandat 1156.912 kb on + strandat 1156.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Fusidic 0.25 mg/ml
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1,154,780 + Synpcc7942_1133 0.64 +0.1
1,154,895 - Synpcc7942_1133 0.69 -0.6
1,155,206 - Synpcc7942_1133 0.83 +0.5
1,155,235 + Synpcc7942_1133 0.85 -0.7
1,155,290 + Synpcc7942_1133 0.87 -0.5
1,155,315 + Synpcc7942_1133 0.89 -0.0
1,155,407 - +0.9
1,155,521 - -1.3
1,155,523 + +0.2
1,155,524 - -1.9
1,155,612 - +0.3
1,155,622 - +0.7
1,155,713 + Synpcc7942_1134 0.19 -1.4
1,155,727 + Synpcc7942_1134 0.24 -0.5
1,155,744 + Synpcc7942_1134 0.29 +0.0
1,156,053 + +0.0
1,156,053 + +1.0
1,156,053 + -0.4
1,156,063 + +0.8
1,156,291 - +0.8
1,156,406 + -0.3
1,156,445 + -0.0
1,156,453 - +0.6
1,156,453 - +0.1
1,156,453 - +0.2
1,156,521 - -1.4
1,156,534 - -1.7
1,156,606 + -0.8
1,156,649 + -0.4
1,156,739 - +0.2
1,156,745 + -0.2
1,156,746 + +0.5
1,156,765 + -0.5
1,156,783 - -0.7
1,156,873 - +0.5
1,156,879 - +0.5
1,156,894 + +0.0
1,156,912 + +0.4
1,156,936 - -0.5

Or see this region's nucleotide sequence