Experiment: BG11 with Fusidic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0567 and codA are separated by 2 nucleotides codA and rpoD4 are separated by 30 nucleotides
Synpcc7942_0567: Synpcc7942_0567 - hypothetical protein, at 548,019 to 549,368
_0567
Synpcc7942_0568: codA - cytosine deaminase, at 549,371 to 550,687
codA
Synpcc7942_0569: rpoD4 - DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like, at 550,718 to 551,653
rpoD4
Position (kb) 549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 548.411 kb on + strand, within Synpcc7942_0567 at 548.422 kb on + strand, within Synpcc7942_0567 at 548.428 kb on - strand, within Synpcc7942_0567 at 548.432 kb on + strand, within Synpcc7942_0567 at 548.440 kb on - strand, within Synpcc7942_0567 at 548.448 kb on - strand, within Synpcc7942_0567 at 548.458 kb on - strand, within Synpcc7942_0567 at 548.460 kb on - strand, within Synpcc7942_0567 at 548.465 kb on - strand, within Synpcc7942_0567 at 548.465 kb on - strand, within Synpcc7942_0567 at 548.484 kb on - strand, within Synpcc7942_0567 at 548.490 kb on + strand, within Synpcc7942_0567 at 548.496 kb on - strand, within Synpcc7942_0567 at 548.503 kb on - strand, within Synpcc7942_0567 at 548.503 kb on - strand, within Synpcc7942_0567 at 548.503 kb on - strand, within Synpcc7942_0567 at 548.503 kb on - strand, within Synpcc7942_0567 at 548.534 kb on + strand, within Synpcc7942_0567 at 548.544 kb on - strand, within Synpcc7942_0567 at 548.552 kb on - strand, within Synpcc7942_0567 at 548.552 kb on - strand, within Synpcc7942_0567 at 548.556 kb on + strand, within Synpcc7942_0567 at 548.564 kb on - strand, within Synpcc7942_0567 at 548.564 kb on - strand, within Synpcc7942_0567 at 548.673 kb on + strand, within Synpcc7942_0567 at 548.681 kb on + strand, within Synpcc7942_0567 at 548.681 kb on - strand, within Synpcc7942_0567 at 548.705 kb on - strand, within Synpcc7942_0567 at 548.711 kb on + strand, within Synpcc7942_0567 at 548.745 kb on + strand, within Synpcc7942_0567 at 548.757 kb on + strand, within Synpcc7942_0567 at 548.765 kb on - strand, within Synpcc7942_0567 at 548.780 kb on - strand, within Synpcc7942_0567 at 548.800 kb on + strand, within Synpcc7942_0567 at 548.800 kb on + strand, within Synpcc7942_0567 at 548.813 kb on - strand, within Synpcc7942_0567 at 548.819 kb on - strand, within Synpcc7942_0567 at 548.823 kb on + strand at 548.828 kb on + strand, within Synpcc7942_0567 at 548.833 kb on + strand, within Synpcc7942_0567 at 548.841 kb on - strand, within Synpcc7942_0567 at 548.842 kb on + strand, within Synpcc7942_0567 at 548.849 kb on + strand, within Synpcc7942_0567 at 548.854 kb on + strand, within Synpcc7942_0567 at 548.862 kb on - strand, within Synpcc7942_0567 at 548.872 kb on + strand, within Synpcc7942_0567 at 548.885 kb on + strand, within Synpcc7942_0567 at 548.890 kb on - strand, within Synpcc7942_0567 at 548.893 kb on - strand, within Synpcc7942_0567 at 548.923 kb on + strand, within Synpcc7942_0567 at 548.937 kb on + strand, within Synpcc7942_0567 at 548.945 kb on + strand, within Synpcc7942_0567 at 548.965 kb on + strand, within Synpcc7942_0567 at 548.965 kb on + strand, within Synpcc7942_0567 at 548.973 kb on - strand, within Synpcc7942_0567 at 548.992 kb on - strand, within Synpcc7942_0567 at 549.098 kb on - strand, within Synpcc7942_0567 at 549.100 kb on + strand, within Synpcc7942_0567 at 549.119 kb on + strand, within Synpcc7942_0567 at 549.134 kb on + strand, within Synpcc7942_0567 at 549.134 kb on + strand, within Synpcc7942_0567 at 549.134 kb on + strand, within Synpcc7942_0567 at 549.137 kb on - strand, within Synpcc7942_0567 at 549.213 kb on + strand, within Synpcc7942_0567 at 549.221 kb on - strand, within Synpcc7942_0567 at 549.276 kb on + strand at 549.276 kb on + strand at 549.282 kb on + strand at 549.282 kb on + strand at 549.282 kb on + strand at 549.283 kb on + strand at 549.290 kb on - strand at 549.290 kb on - strand at 549.291 kb on - strand at 549.305 kb on + strand at 549.338 kb on + strand at 549.345 kb on + strand at 549.345 kb on + strand at 549.345 kb on + strand at 549.345 kb on + strand at 549.345 kb on + strand at 549.346 kb on - strand at 549.353 kb on - strand at 549.353 kb on - strand at 549.353 kb on - strand at 549.389 kb on + strand at 549.412 kb on + strand at 549.464 kb on - strand at 549.550 kb on + strand, within codA at 549.550 kb on + strand, within codA at 549.596 kb on - strand, within codA at 549.597 kb on + strand, within codA at 549.605 kb on - strand, within codA at 549.624 kb on - strand, within codA at 549.653 kb on + strand, within codA at 549.661 kb on - strand, within codA at 549.669 kb on + strand, within codA at 549.677 kb on - strand, within codA at 549.701 kb on - strand, within codA at 549.731 kb on + strand, within codA at 549.742 kb on + strand, within codA at 549.750 kb on - strand, within codA at 549.750 kb on - strand, within codA at 549.750 kb on - strand, within codA at 549.828 kb on + strand, within codA at 549.843 kb on + strand, within codA at 549.843 kb on + strand, within codA at 549.843 kb on + strand, within codA at 549.867 kb on + strand, within codA at 549.867 kb on + strand, within codA at 549.875 kb on - strand, within codA at 549.886 kb on + strand, within codA at 549.886 kb on + strand, within codA at 549.886 kb on + strand, within codA at 549.886 kb on + strand, within codA at 549.894 kb on - strand, within codA at 549.894 kb on - strand, within codA at 549.894 kb on - strand, within codA at 549.900 kb on + strand, within codA at 549.908 kb on - strand, within codA at 549.935 kb on + strand, within codA at 549.945 kb on - strand, within codA at 549.948 kb on + strand, within codA at 549.950 kb on + strand, within codA at 549.973 kb on + strand, within codA at 549.975 kb on - strand, within codA at 550.080 kb on + strand, within codA at 550.088 kb on - strand, within codA at 550.093 kb on - strand, within codA at 550.147 kb on + strand, within codA at 550.155 kb on - strand, within codA at 550.155 kb on - strand, within codA at 550.156 kb on + strand, within codA at 550.165 kb on - strand, within codA at 550.226 kb on + strand, within codA at 550.226 kb on + strand, within codA at 550.234 kb on - strand at 550.234 kb on - strand, within codA at 550.263 kb on - strand, within codA at 550.270 kb on + strand, within codA at 550.278 kb on - strand, within codA at 550.283 kb on - strand, within codA at 550.294 kb on - strand, within codA at 550.298 kb on + strand, within codA at 550.311 kb on - strand, within codA at 550.311 kb on - strand, within codA at 550.312 kb on - strand, within codA at 550.370 kb on + strand, within codA at 550.391 kb on + strand, within codA at 550.399 kb on + strand, within codA at 550.407 kb on - strand, within codA at 550.414 kb on + strand, within codA at 550.426 kb on - strand, within codA at 550.474 kb on - strand, within codA at 550.484 kb on + strand, within codA at 550.506 kb on + strand, within codA at 550.514 kb on - strand, within codA at 550.519 kb on - strand, within codA at 550.599 kb on - strand at 550.604 kb on - strand at 550.610 kb on + strand at 550.621 kb on - strand at 550.623 kb on + strand at 550.655 kb on - strand at 550.673 kb on - strand at 550.692 kb on + strand at 550.692 kb on + strand at 550.699 kb on - strand at 550.699 kb on - strand at 550.699 kb on - strand at 550.719 kb on + strand at 550.719 kb on - strand at 550.726 kb on + strand at 550.726 kb on + strand at 550.726 kb on + strand at 550.739 kb on - strand at 550.741 kb on + strand at 550.741 kb on + strand at 550.921 kb on + strand, within rpoD4 at 550.953 kb on - strand, within rpoD4 at 550.963 kb on + strand, within rpoD4 at 550.963 kb on + strand, within rpoD4 at 550.970 kb on + strand at 550.971 kb on - strand at 550.971 kb on - strand, within rpoD4 at 551.031 kb on - strand, within rpoD4 at 551.042 kb on + strand, within rpoD4 at 551.077 kb on - strand, within rpoD4 at 551.137 kb on - strand, within rpoD4 at 551.293 kb on - strand at 551.364 kb on - strand, within rpoD4 at 551.364 kb on - strand, within rpoD4 at 551.520 kb on - strand, within rpoD4 at 551.538 kb on - strand, within rpoD4 at 551.555 kb on - strand, within rpoD4 at 551.629 kb on + strand at 551.630 kb on - strand at 551.643 kb on + strand at 551.667 kb on + strand at 551.677 kb on + strand at 551.679 kb on + strand at 551.679 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Fusidic 0.25 mg/ml remove 548,411 + Synpcc7942_0567 0.29 +0.9 548,422 + Synpcc7942_0567 0.30 -1.0 548,428 - Synpcc7942_0567 0.30 -0.2 548,432 + Synpcc7942_0567 0.31 -0.1 548,440 - Synpcc7942_0567 0.31 -0.0 548,448 - Synpcc7942_0567 0.32 -0.3 548,458 - Synpcc7942_0567 0.33 -0.4 548,460 - Synpcc7942_0567 0.33 +0.7 548,465 - Synpcc7942_0567 0.33 -0.2 548,465 - Synpcc7942_0567 0.33 +1.5 548,484 - Synpcc7942_0567 0.34 -0.3 548,490 + Synpcc7942_0567 0.35 -0.2 548,496 - Synpcc7942_0567 0.35 +0.9 548,503 - Synpcc7942_0567 0.36 -1.3 548,503 - Synpcc7942_0567 0.36 +0.7 548,503 - Synpcc7942_0567 0.36 +0.8 548,503 - Synpcc7942_0567 0.36 +0.0 548,534 + Synpcc7942_0567 0.38 -0.5 548,544 - Synpcc7942_0567 0.39 -1.1 548,552 - Synpcc7942_0567 0.39 -0.6 548,552 - Synpcc7942_0567 0.39 -1.2 548,556 + Synpcc7942_0567 0.40 -2.0 548,564 - Synpcc7942_0567 0.40 +1.0 548,564 - Synpcc7942_0567 0.40 +0.4 548,673 + Synpcc7942_0567 0.48 -0.8 548,681 + Synpcc7942_0567 0.49 +0.5 548,681 - Synpcc7942_0567 0.49 +3.0 548,705 - Synpcc7942_0567 0.51 +1.5 548,711 + Synpcc7942_0567 0.51 +1.2 548,745 + Synpcc7942_0567 0.54 +1.6 548,757 + Synpcc7942_0567 0.55 +0.2 548,765 - Synpcc7942_0567 0.55 -0.8 548,780 - Synpcc7942_0567 0.56 -0.4 548,800 + Synpcc7942_0567 0.58 -0.5 548,800 + Synpcc7942_0567 0.58 -2.0 548,813 - Synpcc7942_0567 0.59 +0.4 548,819 - Synpcc7942_0567 0.59 -1.9 548,823 + -0.3 548,828 + Synpcc7942_0567 0.60 -1.2 548,833 + Synpcc7942_0567 0.60 +0.5 548,841 - Synpcc7942_0567 0.61 -0.8 548,842 + Synpcc7942_0567 0.61 -0.4 548,849 + Synpcc7942_0567 0.61 +0.3 548,854 + Synpcc7942_0567 0.62 -0.4 548,862 - Synpcc7942_0567 0.62 +1.7 548,872 + Synpcc7942_0567 0.63 -0.1 548,885 + Synpcc7942_0567 0.64 +0.6 548,890 - Synpcc7942_0567 0.65 -0.8 548,893 - Synpcc7942_0567 0.65 -0.7 548,923 + Synpcc7942_0567 0.67 +0.4 548,937 + Synpcc7942_0567 0.68 -0.3 548,945 + Synpcc7942_0567 0.69 -0.5 548,965 + Synpcc7942_0567 0.70 +2.3 548,965 + Synpcc7942_0567 0.70 +0.6 548,973 - Synpcc7942_0567 0.71 -0.1 548,992 - Synpcc7942_0567 0.72 -1.1 549,098 - Synpcc7942_0567 0.80 +0.5 549,100 + Synpcc7942_0567 0.80 +1.3 549,119 + Synpcc7942_0567 0.81 +0.7 549,134 + Synpcc7942_0567 0.83 -1.4 549,134 + Synpcc7942_0567 0.83 -2.5 549,134 + Synpcc7942_0567 0.83 -0.4 549,137 - Synpcc7942_0567 0.83 +0.1 549,213 + Synpcc7942_0567 0.88 -0.3 549,221 - Synpcc7942_0567 0.89 -0.4 549,276 + +0.5 549,276 + +1.5 549,282 + -0.3 549,282 + +0.2 549,282 + +0.7 549,283 + +0.5 549,290 - +0.6 549,290 - +0.6 549,291 - +1.7 549,305 + +1.3 549,338 + +0.8 549,345 + -0.2 549,345 + +0.5 549,345 + +1.2 549,345 + -0.7 549,345 + -0.8 549,346 - -0.4 549,353 - -1.3 549,353 - -0.3 549,353 - -0.3 549,389 + +0.4 549,412 + -1.3 549,464 - -1.5 549,550 + codA Synpcc7942_0568 0.14 -1.3 549,550 + codA Synpcc7942_0568 0.14 +0.0 549,596 - codA Synpcc7942_0568 0.17 -0.4 549,597 + codA Synpcc7942_0568 0.17 +0.1 549,605 - codA Synpcc7942_0568 0.18 -0.3 549,624 - codA Synpcc7942_0568 0.19 -0.2 549,653 + codA Synpcc7942_0568 0.21 -1.1 549,661 - codA Synpcc7942_0568 0.22 -0.4 549,669 + codA Synpcc7942_0568 0.23 +0.2 549,677 - codA Synpcc7942_0568 0.23 -0.6 549,701 - codA Synpcc7942_0568 0.25 +0.1 549,731 + codA Synpcc7942_0568 0.27 +1.3 549,742 + codA Synpcc7942_0568 0.28 -0.4 549,750 - codA Synpcc7942_0568 0.29 -0.3 549,750 - codA Synpcc7942_0568 0.29 +0.2 549,750 - codA Synpcc7942_0568 0.29 +0.9 549,828 + codA Synpcc7942_0568 0.35 +0.0 549,843 + codA Synpcc7942_0568 0.36 -0.1 549,843 + codA Synpcc7942_0568 0.36 -0.7 549,843 + codA Synpcc7942_0568 0.36 -3.7 549,867 + codA Synpcc7942_0568 0.38 -0.3 549,867 + codA Synpcc7942_0568 0.38 +0.6 549,875 - codA Synpcc7942_0568 0.38 +1.0 549,886 + codA Synpcc7942_0568 0.39 -1.0 549,886 + codA Synpcc7942_0568 0.39 +0.5 549,886 + codA Synpcc7942_0568 0.39 -0.5 549,886 + codA Synpcc7942_0568 0.39 -0.5 549,894 - codA Synpcc7942_0568 0.40 +1.9 549,894 - codA Synpcc7942_0568 0.40 -0.5 549,894 - codA Synpcc7942_0568 0.40 +0.1 549,900 + codA Synpcc7942_0568 0.40 -0.8 549,908 - codA Synpcc7942_0568 0.41 +0.7 549,935 + codA Synpcc7942_0568 0.43 +0.2 549,945 - codA Synpcc7942_0568 0.44 -0.8 549,948 + codA Synpcc7942_0568 0.44 -0.3 549,950 + codA Synpcc7942_0568 0.44 +0.3 549,973 + codA Synpcc7942_0568 0.46 -1.5 549,975 - codA Synpcc7942_0568 0.46 -0.2 550,080 + codA Synpcc7942_0568 0.54 -0.4 550,088 - codA Synpcc7942_0568 0.54 +0.3 550,093 - codA Synpcc7942_0568 0.55 -0.1 550,147 + codA Synpcc7942_0568 0.59 +0.1 550,155 - codA Synpcc7942_0568 0.60 -0.3 550,155 - codA Synpcc7942_0568 0.60 -1.3 550,156 + codA Synpcc7942_0568 0.60 +0.0 550,165 - codA Synpcc7942_0568 0.60 -0.6 550,226 + codA Synpcc7942_0568 0.65 +1.3 550,226 + codA Synpcc7942_0568 0.65 -1.2 550,234 - +0.0 550,234 - codA Synpcc7942_0568 0.66 -0.2 550,263 - codA Synpcc7942_0568 0.68 +0.2 550,270 + codA Synpcc7942_0568 0.68 -0.3 550,278 - codA Synpcc7942_0568 0.69 +1.4 550,283 - codA Synpcc7942_0568 0.69 -0.2 550,294 - codA Synpcc7942_0568 0.70 +2.5 550,298 + codA Synpcc7942_0568 0.70 +0.5 550,311 - codA Synpcc7942_0568 0.71 +1.4 550,311 - codA Synpcc7942_0568 0.71 -0.3 550,312 - codA Synpcc7942_0568 0.71 +0.1 550,370 + codA Synpcc7942_0568 0.76 +0.1 550,391 + codA Synpcc7942_0568 0.77 +0.7 550,399 + codA Synpcc7942_0568 0.78 +0.7 550,407 - codA Synpcc7942_0568 0.79 +0.8 550,414 + codA Synpcc7942_0568 0.79 +0.3 550,426 - codA Synpcc7942_0568 0.80 -1.6 550,474 - codA Synpcc7942_0568 0.84 -0.1 550,484 + codA Synpcc7942_0568 0.85 -0.1 550,506 + codA Synpcc7942_0568 0.86 -0.4 550,514 - codA Synpcc7942_0568 0.87 +0.3 550,519 - codA Synpcc7942_0568 0.87 -0.3 550,599 - -0.5 550,604 - +0.1 550,610 + -1.6 550,621 - -0.0 550,623 + -0.8 550,655 - -0.8 550,673 - +0.2 550,692 + +0.2 550,692 + -0.5 550,699 - -0.8 550,699 - -0.6 550,699 - +0.3 550,719 + +0.0 550,719 - -2.3 550,726 + +0.0 550,726 + +0.5 550,726 + +0.2 550,739 - -0.1 550,741 + -0.8 550,741 + -0.0 550,921 + rpoD4 Synpcc7942_0569 0.22 -3.3 550,953 - rpoD4 Synpcc7942_0569 0.25 -1.5 550,963 + rpoD4 Synpcc7942_0569 0.26 -2.3 550,963 + rpoD4 Synpcc7942_0569 0.26 -0.8 550,970 + -0.5 550,971 - +0.5 550,971 - rpoD4 Synpcc7942_0569 0.27 -0.5 551,031 - rpoD4 Synpcc7942_0569 0.33 -0.3 551,042 + rpoD4 Synpcc7942_0569 0.35 -2.0 551,077 - rpoD4 Synpcc7942_0569 0.38 -1.5 551,137 - rpoD4 Synpcc7942_0569 0.45 -1.0 551,293 - +1.0 551,364 - rpoD4 Synpcc7942_0569 0.69 -1.5 551,364 - rpoD4 Synpcc7942_0569 0.69 -2.0 551,520 - rpoD4 Synpcc7942_0569 0.86 -1.3 551,538 - rpoD4 Synpcc7942_0569 0.88 -0.5 551,555 - rpoD4 Synpcc7942_0569 0.89 -0.5 551,629 + -0.9 551,630 - -1.1 551,643 + -2.3 551,667 + -2.8 551,677 + -1.9 551,679 + -0.5 551,679 + +0.5
Or see this region's nucleotide sequence