Experiment: BG11 with Fusidic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0415 and Synpcc7942_0416 are separated by 243 nucleotides Synpcc7942_0416 and Synpcc7942_0417 are separated by 78 nucleotides
Synpcc7942_0415: Synpcc7942_0415 - hypothetical protein, at 405,168 to 406,145
_0415
Synpcc7942_0416: Synpcc7942_0416 - hypothetical protein, at 406,389 to 406,772
_0416
Synpcc7942_0417: Synpcc7942_0417 - ATPase, at 406,851 to 408,359
_0417
Position (kb) 406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 405.391 kb on + strand, within Synpcc7942_0415 at 405.419 kb on + strand, within Synpcc7942_0415 at 405.419 kb on + strand, within Synpcc7942_0415 at 405.437 kb on + strand, within Synpcc7942_0415 at 405.438 kb on + strand, within Synpcc7942_0415 at 405.443 kb on + strand, within Synpcc7942_0415 at 405.443 kb on + strand, within Synpcc7942_0415 at 405.446 kb on - strand, within Synpcc7942_0415 at 405.473 kb on + strand, within Synpcc7942_0415 at 405.473 kb on + strand, within Synpcc7942_0415 at 405.511 kb on - strand, within Synpcc7942_0415 at 405.538 kb on + strand, within Synpcc7942_0415 at 405.541 kb on - strand, within Synpcc7942_0415 at 405.543 kb on + strand, within Synpcc7942_0415 at 405.543 kb on + strand, within Synpcc7942_0415 at 405.546 kb on - strand, within Synpcc7942_0415 at 405.591 kb on - strand, within Synpcc7942_0415 at 405.608 kb on - strand, within Synpcc7942_0415 at 405.627 kb on - strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.642 kb on - strand, within Synpcc7942_0415 at 405.642 kb on - strand, within Synpcc7942_0415 at 405.646 kb on + strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.759 kb on - strand, within Synpcc7942_0415 at 405.759 kb on - strand, within Synpcc7942_0415 at 405.793 kb on + strand, within Synpcc7942_0415 at 405.799 kb on - strand, within Synpcc7942_0415 at 405.833 kb on - strand, within Synpcc7942_0415 at 405.833 kb on - strand, within Synpcc7942_0415 at 405.844 kb on + strand, within Synpcc7942_0415 at 405.844 kb on + strand, within Synpcc7942_0415 at 405.849 kb on + strand, within Synpcc7942_0415 at 405.850 kb on + strand, within Synpcc7942_0415 at 405.856 kb on + strand, within Synpcc7942_0415 at 405.856 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.904 kb on + strand, within Synpcc7942_0415 at 405.907 kb on - strand, within Synpcc7942_0415 at 405.918 kb on + strand, within Synpcc7942_0415 at 405.939 kb on + strand, within Synpcc7942_0415 at 405.955 kb on + strand, within Synpcc7942_0415 at 405.958 kb on + strand, within Synpcc7942_0415 at 405.958 kb on + strand at 405.958 kb on + strand, within Synpcc7942_0415 at 406.008 kb on - strand, within Synpcc7942_0415 at 406.051 kb on + strand at 406.056 kb on + strand at 406.056 kb on + strand at 406.062 kb on + strand at 406.090 kb on + strand at 406.107 kb on - strand at 406.107 kb on - strand at 406.117 kb on - strand at 406.131 kb on + strand at 406.139 kb on - strand at 406.153 kb on + strand at 406.155 kb on + strand at 406.155 kb on + strand at 406.161 kb on - strand at 406.163 kb on - strand at 406.163 kb on - strand at 406.165 kb on + strand at 406.172 kb on + strand at 406.173 kb on - strand at 406.173 kb on - strand at 406.180 kb on - strand at 406.222 kb on - strand at 406.245 kb on + strand at 406.263 kb on - strand at 406.484 kb on + strand, within Synpcc7942_0416 at 406.500 kb on + strand, within Synpcc7942_0416 at 406.533 kb on + strand at 406.547 kb on + strand at 406.555 kb on - strand, within Synpcc7942_0416 at 406.555 kb on - strand, within Synpcc7942_0416 at 406.562 kb on + strand, within Synpcc7942_0416 at 406.583 kb on + strand, within Synpcc7942_0416 at 406.659 kb on + strand, within Synpcc7942_0416 at 406.667 kb on - strand, within Synpcc7942_0416 at 406.690 kb on - strand, within Synpcc7942_0416 at 406.690 kb on - strand, within Synpcc7942_0416 at 406.716 kb on + strand, within Synpcc7942_0416 at 406.724 kb on - strand, within Synpcc7942_0416 at 406.773 kb on + strand at 406.798 kb on + strand at 406.808 kb on - strand at 406.868 kb on - strand at 406.934 kb on + strand at 406.987 kb on - strand at 407.036 kb on + strand, within Synpcc7942_0417 at 407.039 kb on - strand, within Synpcc7942_0417 at 407.041 kb on + strand, within Synpcc7942_0417 at 407.044 kb on - strand, within Synpcc7942_0417 at 407.044 kb on - strand, within Synpcc7942_0417 at 407.049 kb on - strand, within Synpcc7942_0417 at 407.088 kb on - strand, within Synpcc7942_0417 at 407.132 kb on + strand, within Synpcc7942_0417 at 407.174 kb on + strand, within Synpcc7942_0417 at 407.184 kb on + strand, within Synpcc7942_0417 at 407.197 kb on - strand at 407.204 kb on + strand, within Synpcc7942_0417 at 407.283 kb on + strand, within Synpcc7942_0417 at 407.350 kb on + strand, within Synpcc7942_0417 at 407.376 kb on + strand, within Synpcc7942_0417 at 407.449 kb on + strand, within Synpcc7942_0417 at 407.556 kb on + strand at 407.612 kb on + strand, within Synpcc7942_0417 at 407.624 kb on + strand, within Synpcc7942_0417 at 407.624 kb on + strand, within Synpcc7942_0417 at 407.624 kb on + strand, within Synpcc7942_0417 at 407.657 kb on - strand, within Synpcc7942_0417 at 407.732 kb on + strand at 407.733 kb on + strand, within Synpcc7942_0417 at 407.740 kb on - strand, within Synpcc7942_0417 at 407.740 kb on - strand, within Synpcc7942_0417 at 407.756 kb on - strand, within Synpcc7942_0417 at 407.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Fusidic 0.25 mg/ml remove 405,391 + Synpcc7942_0415 0.23 -2.6 405,419 + Synpcc7942_0415 0.26 -0.4 405,419 + Synpcc7942_0415 0.26 +0.1 405,437 + Synpcc7942_0415 0.28 -1.1 405,438 + Synpcc7942_0415 0.28 -0.4 405,443 + Synpcc7942_0415 0.28 -0.0 405,443 + Synpcc7942_0415 0.28 -0.4 405,446 - Synpcc7942_0415 0.28 -0.3 405,473 + Synpcc7942_0415 0.31 -0.9 405,473 + Synpcc7942_0415 0.31 -0.5 405,511 - Synpcc7942_0415 0.35 -0.7 405,538 + Synpcc7942_0415 0.38 +0.6 405,541 - Synpcc7942_0415 0.38 -0.2 405,543 + Synpcc7942_0415 0.38 -1.9 405,543 + Synpcc7942_0415 0.38 -1.9 405,546 - Synpcc7942_0415 0.39 -0.3 405,591 - Synpcc7942_0415 0.43 +0.6 405,608 - Synpcc7942_0415 0.45 +1.5 405,627 - Synpcc7942_0415 0.47 +0.3 405,634 + Synpcc7942_0415 0.48 -0.2 405,634 + Synpcc7942_0415 0.48 +0.8 405,634 + Synpcc7942_0415 0.48 -0.4 405,634 + Synpcc7942_0415 0.48 -0.2 405,642 - Synpcc7942_0415 0.48 -0.3 405,642 - Synpcc7942_0415 0.48 -1.3 405,646 + Synpcc7942_0415 0.49 +6.3 405,654 - Synpcc7942_0415 0.50 +0.3 405,654 - Synpcc7942_0415 0.50 -0.9 405,654 - Synpcc7942_0415 0.50 -0.8 405,654 - Synpcc7942_0415 0.50 +0.8 405,759 - Synpcc7942_0415 0.60 -0.5 405,759 - Synpcc7942_0415 0.60 -1.1 405,793 + Synpcc7942_0415 0.64 +0.7 405,799 - Synpcc7942_0415 0.65 +0.2 405,833 - Synpcc7942_0415 0.68 -0.3 405,833 - Synpcc7942_0415 0.68 -0.1 405,844 + Synpcc7942_0415 0.69 +0.9 405,844 + Synpcc7942_0415 0.69 -0.2 405,849 + Synpcc7942_0415 0.70 -0.4 405,850 + Synpcc7942_0415 0.70 -2.0 405,856 + Synpcc7942_0415 0.70 -0.5 405,856 + Synpcc7942_0415 0.70 +0.8 405,884 + Synpcc7942_0415 0.73 -0.6 405,884 + Synpcc7942_0415 0.73 -0.5 405,884 + Synpcc7942_0415 0.73 -0.4 405,904 + Synpcc7942_0415 0.75 -0.2 405,907 - Synpcc7942_0415 0.76 +1.1 405,918 + Synpcc7942_0415 0.77 +0.2 405,939 + Synpcc7942_0415 0.79 +0.2 405,955 + Synpcc7942_0415 0.80 +1.1 405,958 + Synpcc7942_0415 0.81 +0.1 405,958 + +0.1 405,958 + Synpcc7942_0415 0.81 +0.1 406,008 - Synpcc7942_0415 0.86 -1.2 406,051 + -0.5 406,056 + -0.3 406,056 + -0.3 406,062 + +0.2 406,090 + -1.1 406,107 - +0.7 406,107 - -0.1 406,117 - +1.6 406,131 + +0.2 406,139 - -1.2 406,153 + +0.1 406,155 + -1.1 406,155 + +0.9 406,161 - +0.1 406,163 - +0.5 406,163 - -0.0 406,165 + -0.1 406,172 + +0.8 406,173 - -0.2 406,173 - +0.5 406,180 - -1.2 406,222 - -0.8 406,245 + -0.3 406,263 - -1.9 406,484 + Synpcc7942_0416 0.25 -1.2 406,500 + Synpcc7942_0416 0.29 -2.0 406,533 + +1.1 406,547 + +1.1 406,555 - Synpcc7942_0416 0.43 -0.6 406,555 - Synpcc7942_0416 0.43 -1.5 406,562 + Synpcc7942_0416 0.45 -1.1 406,583 + Synpcc7942_0416 0.51 -1.3 406,659 + Synpcc7942_0416 0.70 -1.1 406,667 - Synpcc7942_0416 0.72 -0.3 406,690 - Synpcc7942_0416 0.78 -0.5 406,690 - Synpcc7942_0416 0.78 -2.9 406,716 + Synpcc7942_0416 0.85 -0.8 406,724 - Synpcc7942_0416 0.87 -0.9 406,773 + -1.8 406,798 + +3.2 406,808 - -1.6 406,868 - -1.2 406,934 + -0.8 406,987 - -0.9 407,036 + Synpcc7942_0417 0.12 -0.6 407,039 - Synpcc7942_0417 0.12 -1.1 407,041 + Synpcc7942_0417 0.13 -1.4 407,044 - Synpcc7942_0417 0.13 +0.5 407,044 - Synpcc7942_0417 0.13 -1.5 407,049 - Synpcc7942_0417 0.13 +1.1 407,088 - Synpcc7942_0417 0.16 +2.6 407,132 + Synpcc7942_0417 0.19 -0.1 407,174 + Synpcc7942_0417 0.21 -1.2 407,184 + Synpcc7942_0417 0.22 -0.5 407,197 - -0.5 407,204 + Synpcc7942_0417 0.23 -2.0 407,283 + Synpcc7942_0417 0.29 -1.5 407,350 + Synpcc7942_0417 0.33 -1.6 407,376 + Synpcc7942_0417 0.35 -0.4 407,449 + Synpcc7942_0417 0.40 -1.4 407,556 + +1.1 407,612 + Synpcc7942_0417 0.50 -2.6 407,624 + Synpcc7942_0417 0.51 -1.6 407,624 + Synpcc7942_0417 0.51 -2.1 407,624 + Synpcc7942_0417 0.51 -2.0 407,657 - Synpcc7942_0417 0.53 +0.5 407,732 + +2.1 407,733 + Synpcc7942_0417 0.58 -0.9 407,740 - Synpcc7942_0417 0.59 -3.0 407,740 - Synpcc7942_0417 0.59 -1.9 407,756 - Synpcc7942_0417 0.60 -2.2 407,756 - +2.1
Or see this region's nucleotide sequence