Experiment: Vogels_fungal_media 0.1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19480 and HSERO_RS19485 are separated by 128 nucleotides HSERO_RS19485 and HSERO_RS19490 are separated by 84 nucleotides HSERO_RS19490 and HSERO_RS19495 are separated by 77 nucleotides
HSERO_RS19480: HSERO_RS19480 - membrane protein, at 4,463,928 to 4,464,881
_RS19480
HSERO_RS19485: HSERO_RS19485 - ubiquinone/menaquinone biosynthesis methyltransferase, at 4,465,010 to 4,465,744
_RS19485
HSERO_RS19490: HSERO_RS19490 - hypothetical protein, at 4,465,829 to 4,466,251
_RS19490
HSERO_RS19495: HSERO_RS19495 - histidine triad (HIT) protein, at 4,466,329 to 4,466,781
_RS19495
Position (kb) 4465
4466 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4464.039 kb on - strand, within HSERO_RS19480 at 4464.039 kb on - strand, within HSERO_RS19480 at 4464.252 kb on + strand, within HSERO_RS19480 at 4464.437 kb on - strand, within HSERO_RS19480 at 4464.613 kb on - strand, within HSERO_RS19480 at 4464.668 kb on - strand, within HSERO_RS19480 at 4464.668 kb on - strand, within HSERO_RS19480 at 4464.891 kb on - strand at 4465.790 kb on + strand at 4465.820 kb on + strand at 4466.004 kb on + strand, within HSERO_RS19490 at 4466.443 kb on - strand, within HSERO_RS19495 at 4466.550 kb on + strand, within HSERO_RS19495 at 4466.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X remove 4,464,039 - HSERO_RS19480 0.12 +0.4 4,464,039 - HSERO_RS19480 0.12 -1.1 4,464,252 + HSERO_RS19480 0.34 +0.5 4,464,437 - HSERO_RS19480 0.53 +3.9 4,464,613 - HSERO_RS19480 0.72 +0.2 4,464,668 - HSERO_RS19480 0.78 -0.1 4,464,668 - HSERO_RS19480 0.78 +0.7 4,464,891 - +0.5 4,465,790 + +0.4 4,465,820 + -0.4 4,466,004 + HSERO_RS19490 0.41 -0.4 4,466,443 - HSERO_RS19495 0.25 +0.4 4,466,550 + HSERO_RS19495 0.49 -0.3 4,466,608 - -1.8
Or see this region's nucleotide sequence