Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06095

Experiment: Vogels_fungal_media 0.1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS06090 and HSERO_RS06095 are separated by 347 nucleotidesHSERO_RS06095 and HSERO_RS06100 are separated by 104 nucleotidesHSERO_RS06100 and HSERO_RS06105 are separated by 5 nucleotides HSERO_RS06090: HSERO_RS06090 - restriction endonuclease, at 1,373,302 to 1,374,222 _RS06090 HSERO_RS06095: HSERO_RS06095 - tRNA-Lys, at 1,374,570 to 1,374,645 _RS06095 HSERO_RS06100: HSERO_RS06100 - Tol-Pal cell envelope complex subunit YbgF protein, at 1,374,750 to 1,375,505 _RS06100 HSERO_RS06105: HSERO_RS06105 - OmpA/MotB, at 1,375,511 to 1,376,029 _RS06105 Position (kb) 1374 1375Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1373.615 kb on - strand, within HSERO_RS06090at 1373.677 kb on + strand, within HSERO_RS06090at 1373.685 kb on - strand, within HSERO_RS06090at 1373.685 kb on - strand, within HSERO_RS06090at 1373.685 kb on - strand, within HSERO_RS06090at 1373.738 kb on + strand, within HSERO_RS06090at 1373.738 kb on + strand, within HSERO_RS06090at 1373.741 kb on - strand, within HSERO_RS06090at 1373.789 kb on - strand, within HSERO_RS06090at 1373.789 kb on - strand, within HSERO_RS06090at 1373.789 kb on - strand, within HSERO_RS06090at 1373.825 kb on + strand, within HSERO_RS06090at 1373.833 kb on - strand, within HSERO_RS06090at 1373.901 kb on + strand, within HSERO_RS06090at 1373.945 kb on + strand, within HSERO_RS06090at 1373.958 kb on + strand, within HSERO_RS06090at 1373.977 kb on + strand, within HSERO_RS06090at 1373.980 kb on + strand, within HSERO_RS06090at 1373.983 kb on - strand, within HSERO_RS06090at 1373.985 kb on - strand, within HSERO_RS06090at 1373.985 kb on - strand, within HSERO_RS06090at 1374.007 kb on + strand, within HSERO_RS06090at 1374.040 kb on - strand, within HSERO_RS06090at 1374.069 kb on - strand, within HSERO_RS06090at 1374.071 kb on + strand, within HSERO_RS06090at 1374.109 kb on - strand, within HSERO_RS06090at 1374.143 kb on + strandat 1374.151 kb on - strandat 1374.157 kb on - strandat 1374.159 kb on + strandat 1374.159 kb on + strandat 1374.159 kb on + strandat 1374.167 kb on - strandat 1374.167 kb on - strandat 1374.181 kb on + strandat 1374.187 kb on + strandat 1374.190 kb on - strandat 1374.196 kb on - strandat 1374.198 kb on - strandat 1374.198 kb on - strandat 1374.259 kb on + strandat 1374.264 kb on + strandat 1374.274 kb on - strandat 1374.286 kb on - strandat 1374.286 kb on - strandat 1374.357 kb on + strandat 1374.362 kb on + strandat 1374.367 kb on + strandat 1374.392 kb on + strandat 1374.425 kb on + strandat 1374.547 kb on - strandat 1374.844 kb on + strand, within HSERO_RS06100at 1375.115 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X
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1,373,615 - HSERO_RS06090 0.34 +0.5
1,373,677 + HSERO_RS06090 0.41 +1.2
1,373,685 - HSERO_RS06090 0.42 -1.0
1,373,685 - HSERO_RS06090 0.42 +0.2
1,373,685 - HSERO_RS06090 0.42 +0.2
1,373,738 + HSERO_RS06090 0.47 -0.0
1,373,738 + HSERO_RS06090 0.47 -0.0
1,373,741 - HSERO_RS06090 0.48 +0.4
1,373,789 - HSERO_RS06090 0.53 +0.2
1,373,789 - HSERO_RS06090 0.53 +0.1
1,373,789 - HSERO_RS06090 0.53 +0.1
1,373,825 + HSERO_RS06090 0.57 +0.1
1,373,833 - HSERO_RS06090 0.58 +0.1
1,373,901 + HSERO_RS06090 0.65 +0.5
1,373,945 + HSERO_RS06090 0.70 -0.5
1,373,958 + HSERO_RS06090 0.71 -1.5
1,373,977 + HSERO_RS06090 0.73 -0.2
1,373,980 + HSERO_RS06090 0.74 -0.0
1,373,983 - HSERO_RS06090 0.74 -0.4
1,373,985 - HSERO_RS06090 0.74 -0.2
1,373,985 - HSERO_RS06090 0.74 +0.9
1,374,007 + HSERO_RS06090 0.77 -1.6
1,374,040 - HSERO_RS06090 0.80 +0.3
1,374,069 - HSERO_RS06090 0.83 +0.7
1,374,071 + HSERO_RS06090 0.83 +1.5
1,374,109 - HSERO_RS06090 0.88 +1.2
1,374,143 + +0.4
1,374,151 - -0.2
1,374,157 - +0.2
1,374,159 + -0.4
1,374,159 + +0.6
1,374,159 + +0.1
1,374,167 - -0.5
1,374,167 - -0.2
1,374,181 + -0.4
1,374,187 + +0.2
1,374,190 - -1.2
1,374,196 - +0.1
1,374,198 - -0.3
1,374,198 - +0.3
1,374,259 + +0.1
1,374,264 + -0.0
1,374,274 - +1.0
1,374,286 - +0.2
1,374,286 - +0.1
1,374,357 + -0.6
1,374,362 + +0.1
1,374,367 + -0.6
1,374,392 + -0.0
1,374,425 + -0.0
1,374,547 - -0.1
1,374,844 + HSERO_RS06100 0.12 -4.2
1,375,115 - -0.4

Or see this region's nucleotide sequence