Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08320

Experiment: m.b. syringaldehyde 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08300 and PGA1_c08310 overlap by 4 nucleotidesPGA1_c08310 and PGA1_c08320 are separated by 316 nucleotidesPGA1_c08320 and PGA1_c08330 are separated by 93 nucleotides PGA1_c08300: PGA1_c08300 - hypothetical protein, at 860,352 to 860,858 _c08300 PGA1_c08310: PGA1_c08310 - Hemin uptake protein, at 860,855 to 861,040 _c08310 PGA1_c08320: PGA1_c08320 - transcriptional regulator, LysR family, at 861,357 to 862,178 _c08320 PGA1_c08330: PGA1_c08330 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 862,272 to 863,183 _c08330 Position (kb) 861 862 863Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 860.463 kb on + strand, within PGA1_c08300at 860.516 kb on + strand, within PGA1_c08300at 860.572 kb on + strand, within PGA1_c08300at 860.580 kb on - strand, within PGA1_c08300at 860.584 kb on + strand, within PGA1_c08300at 860.597 kb on - strand, within PGA1_c08300at 860.597 kb on - strand, within PGA1_c08300at 860.673 kb on + strand, within PGA1_c08300at 860.681 kb on - strand, within PGA1_c08300at 860.693 kb on - strand, within PGA1_c08300at 860.743 kb on - strand, within PGA1_c08300at 860.764 kb on + strand, within PGA1_c08300at 860.804 kb on + strand, within PGA1_c08300at 860.814 kb on + strandat 860.906 kb on - strand, within PGA1_c08310at 860.906 kb on - strand, within PGA1_c08310at 860.906 kb on - strand, within PGA1_c08310at 860.989 kb on + strand, within PGA1_c08310at 860.991 kb on + strand, within PGA1_c08310at 860.992 kb on - strand, within PGA1_c08310at 861.034 kb on + strandat 861.037 kb on - strandat 861.085 kb on + strandat 861.093 kb on - strandat 861.223 kb on - strandat 861.233 kb on + strandat 861.238 kb on + strandat 861.241 kb on - strandat 861.243 kb on + strandat 861.245 kb on + strandat 861.253 kb on + strandat 861.253 kb on - strandat 861.261 kb on - strandat 861.326 kb on + strandat 861.366 kb on + strandat 861.366 kb on + strandat 861.366 kb on + strandat 861.367 kb on + strandat 861.374 kb on - strandat 861.377 kb on + strandat 861.425 kb on + strandat 861.436 kb on + strandat 861.438 kb on - strandat 861.444 kb on - strand, within PGA1_c08320at 861.453 kb on - strand, within PGA1_c08320at 861.545 kb on - strand, within PGA1_c08320at 861.547 kb on + strand, within PGA1_c08320at 861.555 kb on - strand, within PGA1_c08320at 861.582 kb on + strand, within PGA1_c08320at 861.735 kb on + strand, within PGA1_c08320at 861.735 kb on + strand, within PGA1_c08320at 861.743 kb on - strand, within PGA1_c08320at 861.755 kb on + strand, within PGA1_c08320at 861.800 kb on - strand, within PGA1_c08320at 861.803 kb on + strand, within PGA1_c08320at 861.803 kb on + strand, within PGA1_c08320at 861.805 kb on + strand, within PGA1_c08320at 861.811 kb on - strand, within PGA1_c08320at 861.850 kb on - strand, within PGA1_c08320at 861.868 kb on + strand, within PGA1_c08320at 861.868 kb on + strand, within PGA1_c08320at 861.921 kb on - strand, within PGA1_c08320at 862.055 kb on + strand, within PGA1_c08320at 862.063 kb on - strand, within PGA1_c08320at 862.097 kb on + strandat 862.097 kb on + strandat 862.118 kb on + strandat 862.128 kb on + strandat 862.152 kb on + strandat 862.152 kb on + strandat 862.215 kb on - strandat 862.215 kb on - strandat 862.238 kb on + strandat 862.238 kb on + strandat 862.239 kb on + strandat 862.247 kb on - strandat 862.262 kb on + strandat 862.287 kb on - strandat 862.305 kb on + strandat 862.305 kb on + strandat 862.305 kb on + strandat 862.305 kb on + strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.313 kb on - strandat 862.336 kb on - strandat 862.380 kb on - strand, within PGA1_c08330at 862.432 kb on + strand, within PGA1_c08330at 862.440 kb on - strand, within PGA1_c08330at 862.452 kb on - strand, within PGA1_c08330at 862.555 kb on + strand, within PGA1_c08330at 862.560 kb on + strand, within PGA1_c08330at 862.569 kb on + strand, within PGA1_c08330at 862.608 kb on + strand, within PGA1_c08330at 862.613 kb on + strand, within PGA1_c08330at 862.613 kb on + strand, within PGA1_c08330at 862.621 kb on - strand, within PGA1_c08330at 862.621 kb on - strand, within PGA1_c08330at 862.621 kb on - strand, within PGA1_c08330at 862.621 kb on - strand, within PGA1_c08330at 862.622 kb on - strand, within PGA1_c08330at 862.657 kb on + strand, within PGA1_c08330at 862.729 kb on + strand, within PGA1_c08330at 862.740 kb on + strand, within PGA1_c08330at 862.781 kb on + strand, within PGA1_c08330at 862.813 kb on + strand, within PGA1_c08330at 862.856 kb on + strand, within PGA1_c08330at 862.864 kb on - strand, within PGA1_c08330at 862.902 kb on + strand, within PGA1_c08330at 862.917 kb on - strand, within PGA1_c08330at 862.932 kb on + strand, within PGA1_c08330at 863.081 kb on + strand, within PGA1_c08330at 863.081 kb on + strand, within PGA1_c08330at 863.086 kb on + strand, within PGA1_c08330at 863.094 kb on - strandat 863.094 kb on - strandat 863.094 kb on - strandat 863.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 2 mM
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860,463 + PGA1_c08300 0.22 +0.4
860,516 + PGA1_c08300 0.32 -0.2
860,572 + PGA1_c08300 0.43 -0.1
860,580 - PGA1_c08300 0.45 -2.8
860,584 + PGA1_c08300 0.46 -0.2
860,597 - PGA1_c08300 0.48 +1.1
860,597 - PGA1_c08300 0.48 -0.4
860,673 + PGA1_c08300 0.63 +0.9
860,681 - PGA1_c08300 0.65 -1.1
860,693 - PGA1_c08300 0.67 +0.6
860,743 - PGA1_c08300 0.77 +0.4
860,764 + PGA1_c08300 0.81 -0.1
860,804 + PGA1_c08300 0.89 +0.2
860,814 + -0.0
860,906 - PGA1_c08310 0.27 -1.8
860,906 - PGA1_c08310 0.27 +0.2
860,906 - PGA1_c08310 0.27 -2.4
860,989 + PGA1_c08310 0.72 -2.1
860,991 + PGA1_c08310 0.73 -2.5
860,992 - PGA1_c08310 0.74 -1.4
861,034 + -0.9
861,037 - -0.6
861,085 + -2.9
861,093 - -2.1
861,223 - -1.5
861,233 + -1.0
861,238 + -2.3
861,241 - -1.8
861,243 + -1.4
861,245 + -1.1
861,253 + -2.4
861,253 - -0.6
861,261 - -2.0
861,326 + -0.8
861,366 + +0.5
861,366 + +0.9
861,366 + +2.8
861,367 + -1.3
861,374 - -0.5
861,377 + -1.1
861,425 + +1.4
861,436 + +0.4
861,438 - +0.0
861,444 - PGA1_c08320 0.11 -2.2
861,453 - PGA1_c08320 0.12 +0.6
861,545 - PGA1_c08320 0.23 +0.8
861,547 + PGA1_c08320 0.23 -0.1
861,555 - PGA1_c08320 0.24 +1.4
861,582 + PGA1_c08320 0.27 -1.0
861,735 + PGA1_c08320 0.46 -0.6
861,735 + PGA1_c08320 0.46 +0.4
861,743 - PGA1_c08320 0.47 +0.3
861,755 + PGA1_c08320 0.48 +0.8
861,800 - PGA1_c08320 0.54 -1.0
861,803 + PGA1_c08320 0.54 -0.0
861,803 + PGA1_c08320 0.54 +1.0
861,805 + PGA1_c08320 0.55 -1.3
861,811 - PGA1_c08320 0.55 +1.6
861,850 - PGA1_c08320 0.60 +0.9
861,868 + PGA1_c08320 0.62 -0.0
861,868 + PGA1_c08320 0.62 -1.0
861,921 - PGA1_c08320 0.69 +0.6
862,055 + PGA1_c08320 0.85 -0.5
862,063 - PGA1_c08320 0.86 +0.5
862,097 + -0.0
862,097 + +1.1
862,118 + -1.9
862,128 + -0.6
862,152 + -0.4
862,152 + +0.5
862,215 - +1.3
862,215 - +0.0
862,238 + +0.7
862,238 + +0.4
862,239 + +0.1
862,247 - +0.5
862,262 + -0.4
862,287 - -0.4
862,305 + +1.4
862,305 + +0.2
862,305 + +0.3
862,305 + -1.0
862,313 - +0.0
862,313 - +0.2
862,313 - -0.6
862,313 - +0.9
862,313 - +0.1
862,313 - +0.9
862,313 - +0.6
862,313 - +0.7
862,313 - +0.4
862,313 - -1.8
862,313 - -1.1
862,313 - -1.0
862,313 - +0.8
862,313 - -0.0
862,313 - -0.9
862,313 - +0.7
862,313 - +0.9
862,313 - -0.3
862,313 - -1.5
862,313 - -0.0
862,313 - -0.2
862,313 - -1.1
862,313 - +0.7
862,313 - -0.6
862,336 - -0.3
862,380 - PGA1_c08330 0.12 +0.2
862,432 + PGA1_c08330 0.18 -0.9
862,440 - PGA1_c08330 0.18 +0.2
862,452 - PGA1_c08330 0.20 +0.5
862,555 + PGA1_c08330 0.31 -0.1
862,560 + PGA1_c08330 0.32 +0.6
862,569 + PGA1_c08330 0.33 -1.0
862,608 + PGA1_c08330 0.37 -0.6
862,613 + PGA1_c08330 0.37 -1.8
862,613 + PGA1_c08330 0.37 -0.0
862,621 - PGA1_c08330 0.38 +0.4
862,621 - PGA1_c08330 0.38 +0.4
862,621 - PGA1_c08330 0.38 +0.4
862,621 - PGA1_c08330 0.38 +1.0
862,622 - PGA1_c08330 0.38 +0.2
862,657 + PGA1_c08330 0.42 -2.0
862,729 + PGA1_c08330 0.50 +1.0
862,740 + PGA1_c08330 0.51 -0.1
862,781 + PGA1_c08330 0.56 -0.1
862,813 + PGA1_c08330 0.59 -1.7
862,856 + PGA1_c08330 0.64 -1.0
862,864 - PGA1_c08330 0.65 +2.5
862,902 + PGA1_c08330 0.69 +0.8
862,917 - PGA1_c08330 0.71 +0.4
862,932 + PGA1_c08330 0.72 +0.5
863,081 + PGA1_c08330 0.89 +1.4
863,081 + PGA1_c08330 0.89 +0.4
863,086 + PGA1_c08330 0.89 +0.7
863,094 - -1.1
863,094 - -0.4
863,094 - +0.4
863,127 - -0.4

Or see this region's nucleotide sequence