Experiment: m.b. syringaldehyde 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08290 and PGA1_c08300 are separated by 81 nucleotides PGA1_c08300 and PGA1_c08310 overlap by 4 nucleotides PGA1_c08310 and PGA1_c08320 are separated by 316 nucleotides
PGA1_c08290: PGA1_c08290 - putative peptidase M75, at 859,002 to 860,270
_c08290
PGA1_c08300: PGA1_c08300 - hypothetical protein, at 860,352 to 860,858
_c08300
PGA1_c08310: PGA1_c08310 - Hemin uptake protein, at 860,855 to 861,040
_c08310
PGA1_c08320: PGA1_c08320 - transcriptional regulator, LysR family, at 861,357 to 862,178
_c08320
Position (kb) 860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 859.415 kb on - strand, within PGA1_c08290 at 859.447 kb on - strand, within PGA1_c08290 at 859.454 kb on - strand, within PGA1_c08290 at 859.500 kb on - strand, within PGA1_c08290 at 859.658 kb on - strand, within PGA1_c08290 at 859.780 kb on + strand, within PGA1_c08290 at 859.794 kb on - strand, within PGA1_c08290 at 859.794 kb on - strand, within PGA1_c08290 at 859.853 kb on + strand, within PGA1_c08290 at 859.853 kb on + strand, within PGA1_c08290 at 859.853 kb on + strand, within PGA1_c08290 at 859.853 kb on + strand, within PGA1_c08290 at 859.858 kb on + strand, within PGA1_c08290 at 859.858 kb on + strand, within PGA1_c08290 at 859.861 kb on - strand, within PGA1_c08290 at 859.861 kb on - strand, within PGA1_c08290 at 859.861 kb on - strand, within PGA1_c08290 at 859.861 kb on - strand, within PGA1_c08290 at 859.886 kb on + strand, within PGA1_c08290 at 860.081 kb on - strand, within PGA1_c08290 at 860.103 kb on + strand, within PGA1_c08290 at 860.132 kb on + strand, within PGA1_c08290 at 860.132 kb on + strand, within PGA1_c08290 at 860.132 kb on + strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.145 kb on - strand at 860.147 kb on + strand at 860.178 kb on + strand at 860.186 kb on + strand at 860.186 kb on + strand at 860.186 kb on + strand at 860.268 kb on + strand at 860.280 kb on + strand at 860.280 kb on + strand at 860.280 kb on + strand at 860.280 kb on + strand at 860.280 kb on + strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.308 kb on - strand at 860.323 kb on - strand at 860.323 kb on - strand at 860.323 kb on - strand at 860.463 kb on + strand, within PGA1_c08300 at 860.516 kb on + strand, within PGA1_c08300 at 860.572 kb on + strand, within PGA1_c08300 at 860.580 kb on - strand, within PGA1_c08300 at 860.584 kb on + strand, within PGA1_c08300 at 860.597 kb on - strand, within PGA1_c08300 at 860.597 kb on - strand, within PGA1_c08300 at 860.673 kb on + strand, within PGA1_c08300 at 860.681 kb on - strand, within PGA1_c08300 at 860.693 kb on - strand, within PGA1_c08300 at 860.743 kb on - strand, within PGA1_c08300 at 860.764 kb on + strand, within PGA1_c08300 at 860.804 kb on + strand, within PGA1_c08300 at 860.814 kb on + strand at 860.906 kb on - strand, within PGA1_c08310 at 860.906 kb on - strand, within PGA1_c08310 at 860.906 kb on - strand, within PGA1_c08310 at 860.989 kb on + strand, within PGA1_c08310 at 860.991 kb on + strand, within PGA1_c08310 at 860.992 kb on - strand, within PGA1_c08310 at 861.034 kb on + strand at 861.037 kb on - strand at 861.085 kb on + strand at 861.093 kb on - strand at 861.223 kb on - strand at 861.233 kb on + strand at 861.238 kb on + strand at 861.241 kb on - strand at 861.243 kb on + strand at 861.245 kb on + strand at 861.253 kb on + strand at 861.253 kb on - strand at 861.261 kb on - strand at 861.326 kb on + strand at 861.366 kb on + strand at 861.366 kb on + strand at 861.366 kb on + strand at 861.367 kb on + strand at 861.374 kb on - strand at 861.377 kb on + strand at 861.425 kb on + strand at 861.436 kb on + strand at 861.438 kb on - strand at 861.444 kb on - strand, within PGA1_c08320 at 861.453 kb on - strand, within PGA1_c08320 at 861.545 kb on - strand, within PGA1_c08320 at 861.547 kb on + strand, within PGA1_c08320 at 861.555 kb on - strand, within PGA1_c08320 at 861.582 kb on + strand, within PGA1_c08320 at 861.735 kb on + strand, within PGA1_c08320 at 861.735 kb on + strand, within PGA1_c08320 at 861.743 kb on - strand, within PGA1_c08320 at 861.755 kb on + strand, within PGA1_c08320 at 861.800 kb on - strand, within PGA1_c08320 at 861.803 kb on + strand, within PGA1_c08320 at 861.803 kb on + strand, within PGA1_c08320 at 861.805 kb on + strand, within PGA1_c08320 at 861.811 kb on - strand, within PGA1_c08320 at 861.850 kb on - strand, within PGA1_c08320
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 2 mM remove 859,415 - PGA1_c08290 0.33 -1.8 859,447 - PGA1_c08290 0.35 -2.0 859,454 - PGA1_c08290 0.36 +0.7 859,500 - PGA1_c08290 0.39 +0.4 859,658 - PGA1_c08290 0.52 +1.1 859,780 + PGA1_c08290 0.61 -0.6 859,794 - PGA1_c08290 0.62 +0.2 859,794 - PGA1_c08290 0.62 -0.3 859,853 + PGA1_c08290 0.67 -0.6 859,853 + PGA1_c08290 0.67 +0.1 859,853 + PGA1_c08290 0.67 -0.6 859,853 + PGA1_c08290 0.67 -0.2 859,858 + PGA1_c08290 0.67 -0.7 859,858 + PGA1_c08290 0.67 -0.2 859,861 - PGA1_c08290 0.68 -0.3 859,861 - PGA1_c08290 0.68 -0.9 859,861 - PGA1_c08290 0.68 +0.6 859,861 - PGA1_c08290 0.68 -0.2 859,886 + PGA1_c08290 0.70 -0.2 860,081 - PGA1_c08290 0.85 -0.8 860,103 + PGA1_c08290 0.87 +0.7 860,132 + PGA1_c08290 0.89 +0.3 860,132 + PGA1_c08290 0.89 -0.1 860,132 + PGA1_c08290 0.89 +0.8 860,140 - PGA1_c08290 0.90 +1.4 860,140 - PGA1_c08290 0.90 -1.1 860,140 - PGA1_c08290 0.90 +0.2 860,140 - PGA1_c08290 0.90 +0.1 860,140 - PGA1_c08290 0.90 +0.5 860,145 - -2.6 860,147 + +1.1 860,178 + +0.6 860,186 + +0.5 860,186 + -2.7 860,186 + -1.5 860,268 + +0.7 860,280 + +0.7 860,280 + +0.7 860,280 + -0.4 860,280 + +0.9 860,280 + -0.9 860,288 - -0.6 860,288 - +0.8 860,288 - -0.5 860,288 - -2.7 860,288 - -0.3 860,288 - +1.0 860,288 - -1.1 860,308 - -1.0 860,323 - -0.9 860,323 - +0.5 860,323 - +0.5 860,463 + PGA1_c08300 0.22 +0.4 860,516 + PGA1_c08300 0.32 -0.2 860,572 + PGA1_c08300 0.43 -0.1 860,580 - PGA1_c08300 0.45 -2.8 860,584 + PGA1_c08300 0.46 -0.2 860,597 - PGA1_c08300 0.48 +1.1 860,597 - PGA1_c08300 0.48 -0.4 860,673 + PGA1_c08300 0.63 +0.9 860,681 - PGA1_c08300 0.65 -1.1 860,693 - PGA1_c08300 0.67 +0.6 860,743 - PGA1_c08300 0.77 +0.4 860,764 + PGA1_c08300 0.81 -0.1 860,804 + PGA1_c08300 0.89 +0.2 860,814 + -0.0 860,906 - PGA1_c08310 0.27 -1.8 860,906 - PGA1_c08310 0.27 +0.2 860,906 - PGA1_c08310 0.27 -2.4 860,989 + PGA1_c08310 0.72 -2.1 860,991 + PGA1_c08310 0.73 -2.5 860,992 - PGA1_c08310 0.74 -1.4 861,034 + -0.9 861,037 - -0.6 861,085 + -2.9 861,093 - -2.1 861,223 - -1.5 861,233 + -1.0 861,238 + -2.3 861,241 - -1.8 861,243 + -1.4 861,245 + -1.1 861,253 + -2.4 861,253 - -0.6 861,261 - -2.0 861,326 + -0.8 861,366 + +0.5 861,366 + +0.9 861,366 + +2.8 861,367 + -1.3 861,374 - -0.5 861,377 + -1.1 861,425 + +1.4 861,436 + +0.4 861,438 - +0.0 861,444 - PGA1_c08320 0.11 -2.2 861,453 - PGA1_c08320 0.12 +0.6 861,545 - PGA1_c08320 0.23 +0.8 861,547 + PGA1_c08320 0.23 -0.1 861,555 - PGA1_c08320 0.24 +1.4 861,582 + PGA1_c08320 0.27 -1.0 861,735 + PGA1_c08320 0.46 -0.6 861,735 + PGA1_c08320 0.46 +0.4 861,743 - PGA1_c08320 0.47 +0.3 861,755 + PGA1_c08320 0.48 +0.8 861,800 - PGA1_c08320 0.54 -1.0 861,803 + PGA1_c08320 0.54 -0.0 861,803 + PGA1_c08320 0.54 +1.0 861,805 + PGA1_c08320 0.55 -1.3 861,811 - PGA1_c08320 0.55 +1.6 861,850 - PGA1_c08320 0.60 +0.9
Or see this region's nucleotide sequence