Experiment: m.b. syringaldehyde 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08280 and PGA1_c08290 are separated by 538 nucleotides PGA1_c08290 and PGA1_c08300 are separated by 81 nucleotides PGA1_c08300 and PGA1_c08310 overlap by 4 nucleotides
PGA1_c08280: PGA1_c08280 - Predicted thiol oxidoreductase, at 857,144 to 858,463
_c08280
PGA1_c08290: PGA1_c08290 - putative peptidase M75, at 859,002 to 860,270
_c08290
PGA1_c08300: PGA1_c08300 - hypothetical protein, at 860,352 to 860,858
_c08300
PGA1_c08310: PGA1_c08310 - Hemin uptake protein, at 860,855 to 861,040
_c08310
Position (kb) 859
860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 858.111 kb on + strand, within PGA1_c08280 at 858.190 kb on + strand, within PGA1_c08280 at 858.201 kb on + strand, within PGA1_c08280 at 858.247 kb on - strand, within PGA1_c08280 at 858.286 kb on + strand, within PGA1_c08280 at 858.294 kb on - strand, within PGA1_c08280 at 858.303 kb on + strand, within PGA1_c08280 at 858.334 kb on + strand at 858.334 kb on + strand at 858.363 kb on + strand at 858.376 kb on - strand at 858.423 kb on - strand at 858.428 kb on - strand at 858.487 kb on - strand at 858.495 kb on + strand at 858.495 kb on + strand at 858.595 kb on + strand at 858.603 kb on - strand at 858.603 kb on - strand at 858.603 kb on - strand at 858.605 kb on + strand at 858.660 kb on - strand at 858.670 kb on + strand at 858.675 kb on + strand at 858.689 kb on + strand at 858.724 kb on + strand at 858.830 kb on - strand at 858.830 kb on - strand at 858.841 kb on - strand at 858.871 kb on - strand at 858.936 kb on + strand at 859.126 kb on + strand at 859.209 kb on - strand, within PGA1_c08290 at 859.211 kb on + strand, within PGA1_c08290 at 859.415 kb on - strand, within PGA1_c08290 at 859.447 kb on - strand, within PGA1_c08290 at 859.454 kb on - strand, within PGA1_c08290 at 859.500 kb on - strand, within PGA1_c08290 at 859.658 kb on - strand, within PGA1_c08290 at 859.780 kb on + strand, within PGA1_c08290 at 859.794 kb on - strand, within PGA1_c08290 at 859.794 kb on - strand, within PGA1_c08290 at 859.853 kb on + strand, within PGA1_c08290 at 859.853 kb on + strand, within PGA1_c08290 at 859.853 kb on + strand, within PGA1_c08290 at 859.853 kb on + strand, within PGA1_c08290 at 859.858 kb on + strand, within PGA1_c08290 at 859.858 kb on + strand, within PGA1_c08290 at 859.861 kb on - strand, within PGA1_c08290 at 859.861 kb on - strand, within PGA1_c08290 at 859.861 kb on - strand, within PGA1_c08290 at 859.861 kb on - strand, within PGA1_c08290 at 859.886 kb on + strand, within PGA1_c08290 at 860.081 kb on - strand, within PGA1_c08290 at 860.103 kb on + strand, within PGA1_c08290 at 860.132 kb on + strand, within PGA1_c08290 at 860.132 kb on + strand, within PGA1_c08290 at 860.132 kb on + strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.140 kb on - strand, within PGA1_c08290 at 860.145 kb on - strand at 860.147 kb on + strand at 860.178 kb on + strand at 860.186 kb on + strand at 860.186 kb on + strand at 860.186 kb on + strand at 860.268 kb on + strand at 860.280 kb on + strand at 860.280 kb on + strand at 860.280 kb on + strand at 860.280 kb on + strand at 860.280 kb on + strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.288 kb on - strand at 860.308 kb on - strand at 860.323 kb on - strand at 860.323 kb on - strand at 860.323 kb on - strand at 860.463 kb on + strand, within PGA1_c08300 at 860.516 kb on + strand, within PGA1_c08300 at 860.572 kb on + strand, within PGA1_c08300 at 860.580 kb on - strand, within PGA1_c08300 at 860.584 kb on + strand, within PGA1_c08300 at 860.597 kb on - strand, within PGA1_c08300 at 860.597 kb on - strand, within PGA1_c08300 at 860.673 kb on + strand, within PGA1_c08300 at 860.681 kb on - strand, within PGA1_c08300 at 860.693 kb on - strand, within PGA1_c08300 at 860.743 kb on - strand, within PGA1_c08300 at 860.764 kb on + strand, within PGA1_c08300 at 860.804 kb on + strand, within PGA1_c08300 at 860.814 kb on + strand at 860.906 kb on - strand, within PGA1_c08310 at 860.906 kb on - strand, within PGA1_c08310 at 860.906 kb on - strand, within PGA1_c08310 at 860.989 kb on + strand, within PGA1_c08310 at 860.991 kb on + strand, within PGA1_c08310 at 860.992 kb on - strand, within PGA1_c08310 at 861.034 kb on + strand at 861.037 kb on - strand at 861.085 kb on + strand at 861.093 kb on - strand at 861.223 kb on - strand at 861.233 kb on + strand at 861.238 kb on + strand at 861.241 kb on - strand at 861.243 kb on + strand at 861.245 kb on + strand at 861.253 kb on + strand at 861.253 kb on - strand at 861.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 2 mM remove 858,111 + PGA1_c08280 0.73 -0.4 858,190 + PGA1_c08280 0.79 +1.0 858,201 + PGA1_c08280 0.80 -0.8 858,247 - PGA1_c08280 0.84 +0.1 858,286 + PGA1_c08280 0.87 +0.3 858,294 - PGA1_c08280 0.87 +0.6 858,303 + PGA1_c08280 0.88 -1.1 858,334 + +0.1 858,334 + +1.1 858,363 + +0.4 858,376 - -1.0 858,423 - -0.5 858,428 - +1.3 858,487 - -1.6 858,495 + -0.8 858,495 + +0.2 858,595 + +2.1 858,603 - -0.8 858,603 - +0.4 858,603 - -0.1 858,605 + -2.2 858,660 - -0.1 858,670 + +0.3 858,675 + +0.9 858,689 + -0.5 858,724 + -0.6 858,830 - -1.5 858,830 - +1.6 858,841 - +1.1 858,871 - -0.2 858,936 + +0.2 859,126 + -0.0 859,209 - PGA1_c08290 0.16 +0.3 859,211 + PGA1_c08290 0.16 -0.8 859,415 - PGA1_c08290 0.33 -1.8 859,447 - PGA1_c08290 0.35 -2.0 859,454 - PGA1_c08290 0.36 +0.7 859,500 - PGA1_c08290 0.39 +0.4 859,658 - PGA1_c08290 0.52 +1.1 859,780 + PGA1_c08290 0.61 -0.6 859,794 - PGA1_c08290 0.62 +0.2 859,794 - PGA1_c08290 0.62 -0.3 859,853 + PGA1_c08290 0.67 -0.6 859,853 + PGA1_c08290 0.67 +0.1 859,853 + PGA1_c08290 0.67 -0.6 859,853 + PGA1_c08290 0.67 -0.2 859,858 + PGA1_c08290 0.67 -0.7 859,858 + PGA1_c08290 0.67 -0.2 859,861 - PGA1_c08290 0.68 -0.3 859,861 - PGA1_c08290 0.68 -0.9 859,861 - PGA1_c08290 0.68 +0.6 859,861 - PGA1_c08290 0.68 -0.2 859,886 + PGA1_c08290 0.70 -0.2 860,081 - PGA1_c08290 0.85 -0.8 860,103 + PGA1_c08290 0.87 +0.7 860,132 + PGA1_c08290 0.89 +0.3 860,132 + PGA1_c08290 0.89 -0.1 860,132 + PGA1_c08290 0.89 +0.8 860,140 - PGA1_c08290 0.90 +1.4 860,140 - PGA1_c08290 0.90 -1.1 860,140 - PGA1_c08290 0.90 +0.2 860,140 - PGA1_c08290 0.90 +0.1 860,140 - PGA1_c08290 0.90 +0.5 860,145 - -2.6 860,147 + +1.1 860,178 + +0.6 860,186 + +0.5 860,186 + -2.7 860,186 + -1.5 860,268 + +0.7 860,280 + +0.7 860,280 + +0.7 860,280 + -0.4 860,280 + +0.9 860,280 + -0.9 860,288 - -0.6 860,288 - +0.8 860,288 - -0.5 860,288 - -2.7 860,288 - -0.3 860,288 - +1.0 860,288 - -1.1 860,308 - -1.0 860,323 - -0.9 860,323 - +0.5 860,323 - +0.5 860,463 + PGA1_c08300 0.22 +0.4 860,516 + PGA1_c08300 0.32 -0.2 860,572 + PGA1_c08300 0.43 -0.1 860,580 - PGA1_c08300 0.45 -2.8 860,584 + PGA1_c08300 0.46 -0.2 860,597 - PGA1_c08300 0.48 +1.1 860,597 - PGA1_c08300 0.48 -0.4 860,673 + PGA1_c08300 0.63 +0.9 860,681 - PGA1_c08300 0.65 -1.1 860,693 - PGA1_c08300 0.67 +0.6 860,743 - PGA1_c08300 0.77 +0.4 860,764 + PGA1_c08300 0.81 -0.1 860,804 + PGA1_c08300 0.89 +0.2 860,814 + -0.0 860,906 - PGA1_c08310 0.27 -1.8 860,906 - PGA1_c08310 0.27 +0.2 860,906 - PGA1_c08310 0.27 -2.4 860,989 + PGA1_c08310 0.72 -2.1 860,991 + PGA1_c08310 0.73 -2.5 860,992 - PGA1_c08310 0.74 -1.4 861,034 + -0.9 861,037 - -0.6 861,085 + -2.9 861,093 - -2.1 861,223 - -1.5 861,233 + -1.0 861,238 + -2.3 861,241 - -1.8 861,243 + -1.4 861,245 + -1.1 861,253 + -2.4 861,253 - -0.6 861,261 - -2.0
Or see this region's nucleotide sequence