Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08270

Experiment: m.b. syringaldehyde 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08260 and PGA1_c08270 are separated by 3 nucleotidesPGA1_c08270 and PGA1_c08280 overlap by 1 nucleotides PGA1_c08260: PGA1_c08260 - Uncharacterized protein conserved in bacteria, at 854,922 to 856,016 _c08260 PGA1_c08270: PGA1_c08270 - Predicted periplasmic lipoprotein, at 856,020 to 857,144 _c08270 PGA1_c08280: PGA1_c08280 - Predicted thiol oxidoreductase, at 857,144 to 858,463 _c08280 Position (kb) 856 857 858Strain fitness (log2 ratio) -3 -2 -1 0 1at 855.255 kb on - strand, within PGA1_c08260at 855.404 kb on + strand, within PGA1_c08260at 855.411 kb on - strand, within PGA1_c08260at 855.411 kb on - strand, within PGA1_c08260at 855.436 kb on - strand, within PGA1_c08260at 855.449 kb on - strand, within PGA1_c08260at 855.512 kb on + strand, within PGA1_c08260at 855.517 kb on + strand, within PGA1_c08260at 855.520 kb on - strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.653 kb on + strand, within PGA1_c08260at 855.661 kb on - strand, within PGA1_c08260at 855.661 kb on - strand, within PGA1_c08260at 855.661 kb on - strand, within PGA1_c08260at 855.661 kb on - strand, within PGA1_c08260at 855.661 kb on - strand, within PGA1_c08260at 855.661 kb on - strand, within PGA1_c08260at 855.708 kb on - strand, within PGA1_c08260at 855.708 kb on - strand, within PGA1_c08260at 855.720 kb on + strand, within PGA1_c08260at 855.728 kb on - strand, within PGA1_c08260at 855.728 kb on - strand, within PGA1_c08260at 855.870 kb on + strand, within PGA1_c08260at 855.870 kb on + strand, within PGA1_c08260at 855.870 kb on + strand, within PGA1_c08260at 855.967 kb on - strandat 856.037 kb on + strandat 856.105 kb on - strandat 856.105 kb on - strandat 856.222 kb on + strand, within PGA1_c08270at 856.222 kb on + strand, within PGA1_c08270at 856.253 kb on + strand, within PGA1_c08270at 856.261 kb on - strand, within PGA1_c08270at 856.335 kb on + strand, within PGA1_c08270at 856.348 kb on + strand, within PGA1_c08270at 856.358 kb on + strand, within PGA1_c08270at 856.358 kb on + strand, within PGA1_c08270at 856.366 kb on - strand, within PGA1_c08270at 856.394 kb on + strand, within PGA1_c08270at 856.466 kb on + strand, within PGA1_c08270at 856.466 kb on + strand, within PGA1_c08270at 856.466 kb on + strand, within PGA1_c08270at 856.466 kb on + strand, within PGA1_c08270at 856.474 kb on - strand, within PGA1_c08270at 856.474 kb on - strand, within PGA1_c08270at 856.476 kb on + strand, within PGA1_c08270at 856.479 kb on - strand, within PGA1_c08270at 856.508 kb on - strand, within PGA1_c08270at 856.569 kb on + strand, within PGA1_c08270at 856.569 kb on + strand, within PGA1_c08270at 856.569 kb on + strand, within PGA1_c08270at 856.577 kb on - strand, within PGA1_c08270at 856.823 kb on + strand, within PGA1_c08270at 856.892 kb on + strand, within PGA1_c08270at 856.898 kb on + strand, within PGA1_c08270at 856.911 kb on - strand, within PGA1_c08270at 856.911 kb on - strand, within PGA1_c08270at 856.911 kb on - strand, within PGA1_c08270at 856.913 kb on + strand, within PGA1_c08270at 856.921 kb on - strand, within PGA1_c08270at 856.983 kb on + strand, within PGA1_c08270at 856.983 kb on + strand, within PGA1_c08270at 856.991 kb on - strand, within PGA1_c08270at 857.028 kb on - strand, within PGA1_c08270at 857.098 kb on + strandat 857.110 kb on + strandat 857.120 kb on + strandat 857.126 kb on + strandat 857.134 kb on - strandat 857.160 kb on - strandat 857.165 kb on + strandat 857.188 kb on - strandat 857.207 kb on + strandat 857.259 kb on + strandat 857.302 kb on - strand, within PGA1_c08280at 857.370 kb on + strand, within PGA1_c08280at 857.387 kb on + strand, within PGA1_c08280at 857.388 kb on + strand, within PGA1_c08280at 857.432 kb on - strand, within PGA1_c08280at 857.442 kb on - strand, within PGA1_c08280at 857.511 kb on + strand, within PGA1_c08280at 857.511 kb on + strand, within PGA1_c08280at 857.519 kb on - strand, within PGA1_c08280at 857.519 kb on - strand, within PGA1_c08280at 857.519 kb on - strand, within PGA1_c08280at 857.524 kb on - strand, within PGA1_c08280at 857.602 kb on + strand, within PGA1_c08280at 857.607 kb on + strand, within PGA1_c08280at 857.617 kb on + strand, within PGA1_c08280at 857.711 kb on - strand, within PGA1_c08280at 857.826 kb on + strand, within PGA1_c08280at 857.931 kb on - strand, within PGA1_c08280at 857.983 kb on + strand, within PGA1_c08280at 857.991 kb on - strand, within PGA1_c08280at 858.111 kb on + strand, within PGA1_c08280

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 2 mM
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855,255 - PGA1_c08260 0.30 +0.5
855,404 + PGA1_c08260 0.44 -0.1
855,411 - PGA1_c08260 0.45 +0.8
855,411 - PGA1_c08260 0.45 -0.2
855,436 - PGA1_c08260 0.47 -0.4
855,449 - PGA1_c08260 0.48 -0.3
855,512 + PGA1_c08260 0.54 +0.8
855,517 + PGA1_c08260 0.54 -1.1
855,520 - PGA1_c08260 0.55 +0.6
855,653 + PGA1_c08260 0.67 +0.1
855,653 + PGA1_c08260 0.67 +0.1
855,653 + PGA1_c08260 0.67 +0.4
855,653 + PGA1_c08260 0.67 +0.1
855,653 + PGA1_c08260 0.67 +1.0
855,653 + PGA1_c08260 0.67 -0.3
855,653 + PGA1_c08260 0.67 -0.3
855,653 + PGA1_c08260 0.67 -0.1
855,653 + PGA1_c08260 0.67 +1.3
855,661 - PGA1_c08260 0.67 -0.3
855,661 - PGA1_c08260 0.67 +1.1
855,661 - PGA1_c08260 0.67 +0.0
855,661 - PGA1_c08260 0.67 +0.5
855,661 - PGA1_c08260 0.67 +1.1
855,661 - PGA1_c08260 0.67 +0.6
855,708 - PGA1_c08260 0.72 -0.7
855,708 - PGA1_c08260 0.72 -2.9
855,720 + PGA1_c08260 0.73 +0.5
855,728 - PGA1_c08260 0.74 -1.5
855,728 - PGA1_c08260 0.74 -0.1
855,870 + PGA1_c08260 0.87 +0.4
855,870 + PGA1_c08260 0.87 +0.4
855,870 + PGA1_c08260 0.87 -1.3
855,967 - +0.2
856,037 + -2.3
856,105 - -0.4
856,105 - -0.1
856,222 + PGA1_c08270 0.18 -1.8
856,222 + PGA1_c08270 0.18 -0.4
856,253 + PGA1_c08270 0.21 -0.2
856,261 - PGA1_c08270 0.21 +0.7
856,335 + PGA1_c08270 0.28 -0.1
856,348 + PGA1_c08270 0.29 +0.2
856,358 + PGA1_c08270 0.30 +0.7
856,358 + PGA1_c08270 0.30 +0.2
856,366 - PGA1_c08270 0.31 +0.7
856,394 + PGA1_c08270 0.33 +0.6
856,466 + PGA1_c08270 0.40 -0.2
856,466 + PGA1_c08270 0.40 +0.7
856,466 + PGA1_c08270 0.40 -0.4
856,466 + PGA1_c08270 0.40 -0.3
856,474 - PGA1_c08270 0.40 -0.3
856,474 - PGA1_c08270 0.40 +0.4
856,476 + PGA1_c08270 0.41 +0.1
856,479 - PGA1_c08270 0.41 +0.7
856,508 - PGA1_c08270 0.43 +0.7
856,569 + PGA1_c08270 0.49 +0.1
856,569 + PGA1_c08270 0.49 +0.1
856,569 + PGA1_c08270 0.49 -0.4
856,577 - PGA1_c08270 0.50 +0.6
856,823 + PGA1_c08270 0.71 -0.4
856,892 + PGA1_c08270 0.78 +0.5
856,898 + PGA1_c08270 0.78 -0.7
856,911 - PGA1_c08270 0.79 -0.0
856,911 - PGA1_c08270 0.79 -0.2
856,911 - PGA1_c08270 0.79 +0.6
856,913 + PGA1_c08270 0.79 -2.0
856,921 - PGA1_c08270 0.80 -0.0
856,983 + PGA1_c08270 0.86 +0.7
856,983 + PGA1_c08270 0.86 -1.5
856,991 - PGA1_c08270 0.86 -0.3
857,028 - PGA1_c08270 0.90 -2.7
857,098 + +0.4
857,110 + +0.8
857,120 + -0.2
857,126 + +0.3
857,134 - -0.1
857,160 - +0.0
857,165 + -0.1
857,188 - +1.0
857,207 + +1.5
857,259 + +1.3
857,302 - PGA1_c08280 0.12 +0.7
857,370 + PGA1_c08280 0.17 +0.5
857,387 + PGA1_c08280 0.18 +0.2
857,388 + PGA1_c08280 0.18 +1.4
857,432 - PGA1_c08280 0.22 -0.3
857,442 - PGA1_c08280 0.23 -1.2
857,511 + PGA1_c08280 0.28 +0.7
857,511 + PGA1_c08280 0.28 +0.3
857,519 - PGA1_c08280 0.28 +1.2
857,519 - PGA1_c08280 0.28 -0.4
857,519 - PGA1_c08280 0.28 +0.6
857,524 - PGA1_c08280 0.29 -0.6
857,602 + PGA1_c08280 0.35 -0.1
857,607 + PGA1_c08280 0.35 -0.6
857,617 + PGA1_c08280 0.36 -1.2
857,711 - PGA1_c08280 0.43 -0.8
857,826 + PGA1_c08280 0.52 +0.0
857,931 - PGA1_c08280 0.60 +0.4
857,983 + PGA1_c08280 0.64 +0.4
857,991 - PGA1_c08280 0.64 -0.3
858,111 + PGA1_c08280 0.73 -0.4

Or see this region's nucleotide sequence