Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06570

Experiment: m.b. syringaldehyde 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c06560 and PGA1_c06570 are separated by 87 nucleotidesPGA1_c06570 and PGA1_c06580 are separated by 89 nucleotides PGA1_c06560: PGA1_c06560 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 674,463 to 675,371 _c06560 PGA1_c06570: PGA1_c06570 - putative integral membrane protein, at 675,459 to 676,373 _c06570 PGA1_c06580: PGA1_c06580 - ketol-acid reductoisomerase IlvC, at 676,463 to 677,485 _c06580 Position (kb) 675 676 677Strain fitness (log2 ratio) -1 0 1 2at 674.476 kb on + strandat 674.645 kb on - strand, within PGA1_c06560at 674.647 kb on + strand, within PGA1_c06560at 674.647 kb on + strand, within PGA1_c06560at 674.663 kb on - strand, within PGA1_c06560at 674.689 kb on + strand, within PGA1_c06560at 674.697 kb on - strand, within PGA1_c06560at 674.708 kb on - strand, within PGA1_c06560at 674.721 kb on - strand, within PGA1_c06560at 674.731 kb on - strand, within PGA1_c06560at 674.860 kb on - strand, within PGA1_c06560at 674.882 kb on + strand, within PGA1_c06560at 674.915 kb on - strand, within PGA1_c06560at 674.915 kb on - strand, within PGA1_c06560at 674.941 kb on + strand, within PGA1_c06560at 675.021 kb on + strand, within PGA1_c06560at 675.027 kb on - strand, within PGA1_c06560at 675.028 kb on - strand, within PGA1_c06560at 675.117 kb on - strand, within PGA1_c06560at 675.134 kb on - strand, within PGA1_c06560at 675.134 kb on - strand, within PGA1_c06560at 675.182 kb on - strand, within PGA1_c06560at 675.191 kb on + strand, within PGA1_c06560at 675.212 kb on + strand, within PGA1_c06560at 675.212 kb on + strand, within PGA1_c06560at 675.220 kb on - strand, within PGA1_c06560at 675.222 kb on + strand, within PGA1_c06560at 675.230 kb on - strand, within PGA1_c06560at 675.230 kb on - strand, within PGA1_c06560at 675.267 kb on - strand, within PGA1_c06560at 675.269 kb on + strand, within PGA1_c06560at 675.269 kb on + strand, within PGA1_c06560at 675.277 kb on - strand, within PGA1_c06560at 675.279 kb on + strand, within PGA1_c06560at 675.349 kb on - strandat 675.548 kb on + strandat 675.621 kb on + strand, within PGA1_c06570at 675.626 kb on + strand, within PGA1_c06570at 675.629 kb on - strand, within PGA1_c06570at 675.670 kb on - strand, within PGA1_c06570at 675.733 kb on - strand, within PGA1_c06570at 675.775 kb on + strand, within PGA1_c06570at 675.796 kb on + strand, within PGA1_c06570at 675.836 kb on + strand, within PGA1_c06570at 675.850 kb on + strand, within PGA1_c06570at 675.850 kb on + strand, within PGA1_c06570at 675.850 kb on + strand, within PGA1_c06570at 675.850 kb on + strand, within PGA1_c06570at 675.855 kb on + strand, within PGA1_c06570at 675.858 kb on - strand, within PGA1_c06570at 675.858 kb on - strand, within PGA1_c06570at 675.863 kb on - strand, within PGA1_c06570at 675.863 kb on - strand, within PGA1_c06570at 675.988 kb on + strand, within PGA1_c06570at 675.996 kb on - strand, within PGA1_c06570at 676.083 kb on + strand, within PGA1_c06570at 676.088 kb on + strand, within PGA1_c06570at 676.088 kb on + strand, within PGA1_c06570at 676.088 kb on + strand, within PGA1_c06570at 676.088 kb on + strand, within PGA1_c06570at 676.091 kb on - strand, within PGA1_c06570at 676.096 kb on - strand, within PGA1_c06570at 676.113 kb on - strand, within PGA1_c06570at 676.157 kb on - strand, within PGA1_c06570at 676.179 kb on - strand, within PGA1_c06570at 676.207 kb on - strand, within PGA1_c06570at 676.227 kb on - strand, within PGA1_c06570at 676.276 kb on + strand, within PGA1_c06570at 676.317 kb on + strandat 676.324 kb on - strandat 676.380 kb on + strandat 676.380 kb on + strandat 676.388 kb on - strandat 676.403 kb on - strandat 676.408 kb on + strandat 676.425 kb on + strandat 676.430 kb on + strandat 676.430 kb on - strandat 676.432 kb on + strandat 676.432 kb on + strandat 676.432 kb on + strandat 676.432 kb on + strandat 676.438 kb on - strandat 676.440 kb on - strandat 676.440 kb on - strandat 676.440 kb on - strandat 676.440 kb on - strandat 676.469 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 2 mM
remove
674,476 + -1.1
674,645 - PGA1_c06560 0.20 -1.7
674,647 + PGA1_c06560 0.20 -0.2
674,647 + PGA1_c06560 0.20 +0.1
674,663 - PGA1_c06560 0.22 +0.3
674,689 + PGA1_c06560 0.25 +0.9
674,697 - PGA1_c06560 0.26 +0.1
674,708 - PGA1_c06560 0.27 -0.4
674,721 - PGA1_c06560 0.28 +1.5
674,731 - PGA1_c06560 0.29 -0.3
674,860 - PGA1_c06560 0.44 +1.4
674,882 + PGA1_c06560 0.46 -0.4
674,915 - PGA1_c06560 0.50 +0.5
674,915 - PGA1_c06560 0.50 +1.8
674,941 + PGA1_c06560 0.53 -1.5
675,021 + PGA1_c06560 0.61 -0.5
675,027 - PGA1_c06560 0.62 +0.2
675,028 - PGA1_c06560 0.62 -0.5
675,117 - PGA1_c06560 0.72 +1.0
675,134 - PGA1_c06560 0.74 +1.3
675,134 - PGA1_c06560 0.74 +1.8
675,182 - PGA1_c06560 0.79 +1.0
675,191 + PGA1_c06560 0.80 -0.5
675,212 + PGA1_c06560 0.82 -0.6
675,212 + PGA1_c06560 0.82 +0.1
675,220 - PGA1_c06560 0.83 +0.1
675,222 + PGA1_c06560 0.83 +1.1
675,230 - PGA1_c06560 0.84 -0.6
675,230 - PGA1_c06560 0.84 +0.8
675,267 - PGA1_c06560 0.88 -0.7
675,269 + PGA1_c06560 0.89 -0.1
675,269 + PGA1_c06560 0.89 -1.7
675,277 - PGA1_c06560 0.90 +0.2
675,279 + PGA1_c06560 0.90 +0.3
675,349 - +0.4
675,548 + +0.4
675,621 + PGA1_c06570 0.18 +1.0
675,626 + PGA1_c06570 0.18 -0.4
675,629 - PGA1_c06570 0.19 +1.2
675,670 - PGA1_c06570 0.23 +0.3
675,733 - PGA1_c06570 0.30 +0.7
675,775 + PGA1_c06570 0.35 -0.9
675,796 + PGA1_c06570 0.37 +0.4
675,836 + PGA1_c06570 0.41 +0.9
675,850 + PGA1_c06570 0.43 +0.4
675,850 + PGA1_c06570 0.43 +0.3
675,850 + PGA1_c06570 0.43 +0.9
675,850 + PGA1_c06570 0.43 -1.1
675,855 + PGA1_c06570 0.43 +1.9
675,858 - PGA1_c06570 0.44 +1.0
675,858 - PGA1_c06570 0.44 +0.9
675,863 - PGA1_c06570 0.44 +2.1
675,863 - PGA1_c06570 0.44 +1.7
675,988 + PGA1_c06570 0.58 +2.2
675,996 - PGA1_c06570 0.59 +0.3
676,083 + PGA1_c06570 0.68 +1.4
676,088 + PGA1_c06570 0.69 -0.4
676,088 + PGA1_c06570 0.69 -0.6
676,088 + PGA1_c06570 0.69 +0.2
676,088 + PGA1_c06570 0.69 +0.9
676,091 - PGA1_c06570 0.69 +0.2
676,096 - PGA1_c06570 0.70 -1.1
676,113 - PGA1_c06570 0.71 +0.3
676,157 - PGA1_c06570 0.76 +1.0
676,179 - PGA1_c06570 0.79 +0.2
676,207 - PGA1_c06570 0.82 -0.1
676,227 - PGA1_c06570 0.84 -0.4
676,276 + PGA1_c06570 0.89 -1.7
676,317 + -0.1
676,324 - -1.7
676,380 + +1.0
676,380 + +0.4
676,388 - +0.4
676,403 - -0.1
676,408 + -1.3
676,425 + +0.7
676,430 + +0.2
676,430 - +0.3
676,432 + +0.1
676,432 + -1.4
676,432 + +0.1
676,432 + +0.2
676,438 - -1.1
676,440 - -0.9
676,440 - +0.4
676,440 - -0.7
676,440 - -0.4
676,469 - +0.5

Or see this region's nucleotide sequence