Experiment: m.b. syringaldehyde 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04320 and PGA1_c04330 are separated by 71 nucleotides PGA1_c04330 and PGA1_c04340 are separated by 0 nucleotides PGA1_c04340 and PGA1_c04350 overlap by 4 nucleotides
PGA1_c04320: PGA1_c04320 - protein PhnM, at 417,449 to 418,591
_c04320
PGA1_c04330: PGA1_c04330 - hypothetical protein, at 418,663 to 419,142
_c04330
PGA1_c04340: PGA1_c04340 - hypothetical protein, at 419,143 to 419,901
_c04340
PGA1_c04350: PGA1_c04350 - putative glycosyltransferase protein, at 419,898 to 421,040
_c04350
Position (kb) 418
419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 417.681 kb on - strand, within PGA1_c04320 at 417.735 kb on - strand, within PGA1_c04320 at 417.768 kb on - strand, within PGA1_c04320 at 417.773 kb on - strand, within PGA1_c04320 at 417.890 kb on - strand, within PGA1_c04320 at 417.944 kb on - strand, within PGA1_c04320 at 418.015 kb on - strand, within PGA1_c04320 at 418.031 kb on - strand, within PGA1_c04320 at 418.136 kb on + strand, within PGA1_c04320 at 418.146 kb on + strand, within PGA1_c04320 at 418.218 kb on + strand, within PGA1_c04320 at 418.226 kb on - strand, within PGA1_c04320 at 418.254 kb on + strand, within PGA1_c04320 at 418.254 kb on + strand, within PGA1_c04320 at 418.262 kb on - strand, within PGA1_c04320 at 418.262 kb on - strand, within PGA1_c04320 at 418.275 kb on + strand, within PGA1_c04320 at 418.275 kb on + strand, within PGA1_c04320 at 418.285 kb on + strand, within PGA1_c04320 at 418.293 kb on - strand, within PGA1_c04320 at 418.374 kb on - strand, within PGA1_c04320 at 418.387 kb on - strand, within PGA1_c04320 at 418.387 kb on - strand, within PGA1_c04320 at 418.438 kb on + strand, within PGA1_c04320 at 418.457 kb on - strand, within PGA1_c04320 at 418.473 kb on + strand, within PGA1_c04320 at 418.586 kb on + strand at 418.630 kb on + strand at 418.638 kb on - strand at 418.638 kb on - strand at 418.652 kb on + strand at 418.659 kb on + strand at 418.659 kb on + strand at 418.672 kb on - strand at 418.672 kb on - strand at 418.692 kb on + strand at 418.695 kb on + strand at 418.698 kb on - strand at 418.705 kb on - strand at 418.800 kb on - strand, within PGA1_c04330 at 418.850 kb on - strand, within PGA1_c04330 at 418.859 kb on - strand, within PGA1_c04330 at 418.878 kb on + strand, within PGA1_c04330 at 418.911 kb on - strand, within PGA1_c04330 at 418.948 kb on - strand, within PGA1_c04330 at 419.007 kb on + strand, within PGA1_c04330 at 419.010 kb on + strand, within PGA1_c04330 at 419.015 kb on - strand, within PGA1_c04330 at 419.015 kb on - strand, within PGA1_c04330 at 419.061 kb on + strand, within PGA1_c04330 at 419.070 kb on - strand, within PGA1_c04330 at 419.081 kb on + strand, within PGA1_c04330 at 419.089 kb on - strand, within PGA1_c04330 at 419.116 kb on - strand at 419.176 kb on + strand at 419.176 kb on + strand at 419.188 kb on - strand at 419.244 kb on + strand, within PGA1_c04340 at 419.395 kb on - strand, within PGA1_c04340 at 419.395 kb on - strand, within PGA1_c04340 at 419.453 kb on + strand, within PGA1_c04340 at 419.490 kb on + strand, within PGA1_c04340 at 419.524 kb on - strand, within PGA1_c04340 at 419.557 kb on + strand, within PGA1_c04340 at 419.631 kb on - strand, within PGA1_c04340 at 419.839 kb on + strand at 419.883 kb on - strand at 419.883 kb on - strand at 419.892 kb on - strand at 419.927 kb on - strand at 419.927 kb on - strand at 419.930 kb on + strand at 420.000 kb on + strand at 420.008 kb on - strand at 420.068 kb on + strand, within PGA1_c04350 at 420.068 kb on + strand, within PGA1_c04350 at 420.076 kb on - strand, within PGA1_c04350 at 420.076 kb on - strand, within PGA1_c04350 at 420.076 kb on - strand, within PGA1_c04350 at 420.076 kb on - strand, within PGA1_c04350
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 2 mM remove 417,681 - PGA1_c04320 0.20 -0.0 417,735 - PGA1_c04320 0.25 -0.3 417,768 - PGA1_c04320 0.28 +0.3 417,773 - PGA1_c04320 0.28 -0.5 417,890 - PGA1_c04320 0.39 -0.4 417,944 - PGA1_c04320 0.43 -0.3 418,015 - PGA1_c04320 0.50 +0.1 418,031 - PGA1_c04320 0.51 +0.6 418,136 + PGA1_c04320 0.60 -0.8 418,146 + PGA1_c04320 0.61 +1.3 418,218 + PGA1_c04320 0.67 -0.7 418,226 - PGA1_c04320 0.68 +0.6 418,254 + PGA1_c04320 0.70 +1.2 418,254 + PGA1_c04320 0.70 -0.0 418,262 - PGA1_c04320 0.71 +0.5 418,262 - PGA1_c04320 0.71 -0.4 418,275 + PGA1_c04320 0.72 -0.5 418,275 + PGA1_c04320 0.72 -0.4 418,285 + PGA1_c04320 0.73 -0.8 418,293 - PGA1_c04320 0.74 -1.1 418,374 - PGA1_c04320 0.81 -0.8 418,387 - PGA1_c04320 0.82 -1.8 418,387 - PGA1_c04320 0.82 +0.4 418,438 + PGA1_c04320 0.87 +2.2 418,457 - PGA1_c04320 0.88 -1.8 418,473 + PGA1_c04320 0.90 -1.1 418,586 + -0.7 418,630 + -0.2 418,638 - -0.6 418,638 - -1.3 418,652 + +1.3 418,659 + -0.5 418,659 + -0.2 418,672 - -0.2 418,672 - -0.9 418,692 + +0.6 418,695 + -1.5 418,698 - +1.0 418,705 - +0.7 418,800 - PGA1_c04330 0.29 -0.4 418,850 - PGA1_c04330 0.39 -0.9 418,859 - PGA1_c04330 0.41 -0.8 418,878 + PGA1_c04330 0.45 -1.2 418,911 - PGA1_c04330 0.52 -0.5 418,948 - PGA1_c04330 0.59 -1.3 419,007 + PGA1_c04330 0.72 +0.5 419,010 + PGA1_c04330 0.72 -1.6 419,015 - PGA1_c04330 0.73 -0.0 419,015 - PGA1_c04330 0.73 -1.0 419,061 + PGA1_c04330 0.83 -1.2 419,070 - PGA1_c04330 0.85 -0.7 419,081 + PGA1_c04330 0.87 +0.2 419,089 - PGA1_c04330 0.89 +0.4 419,116 - -0.0 419,176 + -3.6 419,176 + -0.4 419,188 - -0.7 419,244 + PGA1_c04340 0.13 -0.2 419,395 - PGA1_c04340 0.33 -1.8 419,395 - PGA1_c04340 0.33 -1.1 419,453 + PGA1_c04340 0.41 -0.2 419,490 + PGA1_c04340 0.46 +0.0 419,524 - PGA1_c04340 0.50 -0.6 419,557 + PGA1_c04340 0.55 +0.9 419,631 - PGA1_c04340 0.64 -0.4 419,839 + -0.7 419,883 - -0.8 419,883 - -0.3 419,892 - +0.1 419,927 - -0.0 419,927 - +0.8 419,930 + -1.5 420,000 + -1.6 420,008 - -3.3 420,068 + PGA1_c04350 0.15 +0.8 420,068 + PGA1_c04350 0.15 -2.2 420,076 - PGA1_c04350 0.16 -1.0 420,076 - PGA1_c04350 0.16 -2.9 420,076 - PGA1_c04350 0.16 -1.9 420,076 - PGA1_c04350 0.16 +1.2
Or see this region's nucleotide sequence