Experiment: m.b. syringaldehyde 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00080 and PGA1_65p00090 are separated by 261 nucleotides PGA1_65p00090 and PGA1_65p00100 are separated by 583 nucleotides
PGA1_65p00080: PGA1_65p00080 - putative glycosyl transferase, at 11,335 to 12,579
_65p00080
PGA1_65p00090: PGA1_65p00090 - Uncharacterized conserved protein, at 12,841 to 14,850
_65p00090
PGA1_65p00100: PGA1_65p00100 - Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases, at 15,434 to 15,985
_65p00100
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 11.869 kb on - strand, within PGA1_65p00080 at 12.021 kb on + strand, within PGA1_65p00080 at 12.053 kb on + strand, within PGA1_65p00080 at 12.083 kb on - strand, within PGA1_65p00080 at 12.139 kb on - strand, within PGA1_65p00080 at 12.155 kb on + strand, within PGA1_65p00080 at 12.251 kb on + strand, within PGA1_65p00080 at 12.646 kb on - strand at 12.814 kb on + strand at 12.912 kb on - strand at 13.044 kb on + strand, within PGA1_65p00090 at 13.052 kb on + strand, within PGA1_65p00090 at 13.074 kb on + strand, within PGA1_65p00090 at 13.088 kb on - strand, within PGA1_65p00090 at 13.088 kb on - strand, within PGA1_65p00090 at 13.372 kb on + strand, within PGA1_65p00090 at 13.372 kb on + strand, within PGA1_65p00090 at 13.390 kb on - strand, within PGA1_65p00090 at 13.441 kb on + strand, within PGA1_65p00090 at 13.610 kb on + strand, within PGA1_65p00090 at 13.645 kb on + strand, within PGA1_65p00090 at 14.118 kb on + strand, within PGA1_65p00090 at 14.127 kb on + strand, within PGA1_65p00090 at 14.271 kb on - strand, within PGA1_65p00090 at 14.301 kb on - strand, within PGA1_65p00090 at 14.305 kb on + strand, within PGA1_65p00090 at 14.610 kb on - strand, within PGA1_65p00090 at 14.651 kb on - strand at 14.829 kb on + strand at 14.873 kb on - strand at 14.873 kb on - strand at 14.990 kb on + strand at 15.008 kb on - strand at 15.646 kb on + strand, within PGA1_65p00100
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 2 mM remove 11,869 - PGA1_65p00080 0.43 +0.4 12,021 + PGA1_65p00080 0.55 +1.0 12,053 + PGA1_65p00080 0.58 +2.3 12,083 - PGA1_65p00080 0.60 -1.9 12,139 - PGA1_65p00080 0.65 +0.0 12,155 + PGA1_65p00080 0.66 -0.8 12,251 + PGA1_65p00080 0.74 -0.2 12,646 - -0.2 12,814 + +0.7 12,912 - +0.5 13,044 + PGA1_65p00090 0.10 +0.9 13,052 + PGA1_65p00090 0.10 +0.0 13,074 + PGA1_65p00090 0.12 -3.1 13,088 - PGA1_65p00090 0.12 -0.1 13,088 - PGA1_65p00090 0.12 -0.6 13,372 + PGA1_65p00090 0.26 -3.0 13,372 + PGA1_65p00090 0.26 -1.8 13,390 - PGA1_65p00090 0.27 -0.2 13,441 + PGA1_65p00090 0.30 +1.5 13,610 + PGA1_65p00090 0.38 -1.0 13,645 + PGA1_65p00090 0.40 -0.8 14,118 + PGA1_65p00090 0.64 +0.5 14,127 + PGA1_65p00090 0.64 -0.2 14,271 - PGA1_65p00090 0.71 -2.5 14,301 - PGA1_65p00090 0.73 -1.3 14,305 + PGA1_65p00090 0.73 -0.4 14,610 - PGA1_65p00090 0.88 +0.8 14,651 - +1.4 14,829 + +0.7 14,873 - -1.4 14,873 - +0.3 14,990 + -1.2 15,008 - +0.1 15,646 + PGA1_65p00100 0.38 -0.8
Or see this region's nucleotide sequence