Experiment: m.b. syringaldehyde 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02880 and PGA1_c02890 are separated by 196 nucleotides PGA1_c02890 and PGA1_c02900 overlap by 1 nucleotides PGA1_c02900 and PGA1_c02910 are separated by 3 nucleotides PGA1_c02910 and PGA1_c02920 are separated by 15 nucleotides PGA1_c02920 and PGA1_c02930 overlap by 4 nucleotides
PGA1_c02880: PGA1_c02880 - uvrABC system protein C, at 277,737 to 279,626
_c02880
PGA1_c02890: PGA1_c02890 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA, at 279,823 to 280,494
_c02890
PGA1_c02900: PGA1_c02900 - putative molybdopterin-converting factor subunit 1, at 280,494 to 280,739
_c02900
PGA1_c02910: PGA1_c02910 - molybdopterin-converting factor subunit 2, at 280,743 to 281,204
_c02910
PGA1_c02920: PGA1_c02920 - hypothetical protein, at 281,220 to 281,534
_c02920
PGA1_c02930: PGA1_c02930 - OmpA domain-containing protein, at 281,531 to 283,441
_c02930
Position (kb) 280
281 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 279.539 kb on + strand at 279.620 kb on + strand at 279.622 kb on + strand at 279.665 kb on + strand at 279.691 kb on - strand at 279.693 kb on + strand at 279.725 kb on - strand at 279.750 kb on + strand at 279.750 kb on + strand at 279.750 kb on + strand at 279.750 kb on + strand at 279.750 kb on + strand at 279.758 kb on - strand at 279.758 kb on - strand at 279.758 kb on - strand at 279.758 kb on - strand at 280.610 kb on + strand, within PGA1_c02900 at 280.618 kb on - strand, within PGA1_c02900 at 280.776 kb on - strand at 280.776 kb on - strand at 280.839 kb on + strand, within PGA1_c02910 at 280.847 kb on - strand, within PGA1_c02910 at 280.847 kb on - strand, within PGA1_c02910 at 280.913 kb on + strand, within PGA1_c02910 at 281.024 kb on + strand, within PGA1_c02910 at 281.056 kb on + strand, within PGA1_c02910 at 281.056 kb on + strand, within PGA1_c02910 at 281.251 kb on - strand at 281.251 kb on - strand at 281.299 kb on + strand, within PGA1_c02920 at 281.322 kb on + strand, within PGA1_c02920 at 281.340 kb on - strand, within PGA1_c02920 at 281.385 kb on + strand, within PGA1_c02920 at 281.390 kb on + strand, within PGA1_c02920 at 281.411 kb on + strand, within PGA1_c02920 at 281.522 kb on - strand at 281.524 kb on + strand at 281.527 kb on - strand at 281.536 kb on + strand at 281.548 kb on + strand at 281.566 kb on - strand at 281.725 kb on - strand, within PGA1_c02930
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 2 mM remove 279,539 + +2.1 279,620 + -1.6 279,622 + +0.4 279,665 + -0.0 279,691 - +0.4 279,693 + -1.0 279,725 - +0.3 279,750 + -0.0 279,750 + -0.3 279,750 + +0.3 279,750 + -0.0 279,750 + +1.1 279,758 - +0.2 279,758 - -1.0 279,758 - +0.2 279,758 - -0.7 280,610 + PGA1_c02900 0.47 -1.5 280,618 - PGA1_c02900 0.50 -0.7 280,776 - -0.4 280,776 - +1.0 280,839 + PGA1_c02910 0.21 +0.1 280,847 - PGA1_c02910 0.23 -0.1 280,847 - PGA1_c02910 0.23 +0.9 280,913 + PGA1_c02910 0.37 +1.8 281,024 + PGA1_c02910 0.61 +0.1 281,056 + PGA1_c02910 0.68 -1.3 281,056 + PGA1_c02910 0.68 -0.5 281,251 - +0.1 281,251 - -1.4 281,299 + PGA1_c02920 0.25 -1.4 281,322 + PGA1_c02920 0.32 +0.2 281,340 - PGA1_c02920 0.38 -0.9 281,385 + PGA1_c02920 0.52 -1.2 281,390 + PGA1_c02920 0.54 -1.0 281,411 + PGA1_c02920 0.61 -2.4 281,522 - +0.6 281,524 + -3.0 281,527 - -2.1 281,536 + -1.5 281,548 + -0.1 281,566 - +1.0 281,725 - PGA1_c02930 0.10 -2.3
Or see this region's nucleotide sequence