Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23140

Experiment: m.b. syringaldehyde 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. syringaldehyde 2 mM
2,398,204	+		PGA1_c23130	0.31	+0.1
2,398,212	-		PGA1_c23130	0.31	+0.4
2,398,288	-		PGA1_c23130	0.37	-0.5
2,398,330	-		PGA1_c23130	0.40	+0.6
2,398,350	+		PGA1_c23130	0.42	+0.0
2,398,350	+		PGA1_c23130	0.42	-0.7
2,398,357	-		PGA1_c23130	0.42	-0.2
2,398,358	-		PGA1_c23130	0.43	-0.3
2,398,360	+		PGA1_c23130	0.43	+1.4
2,398,383	-		PGA1_c23130	0.44	-0.1
2,398,574	-		PGA1_c23130	0.59	-1.1
2,398,615	+		PGA1_c23130	0.62	-0.6
2,398,732	+		PGA1_c23130	0.71	+1.8
2,398,734	-		PGA1_c23130	0.71	-1.1
2,398,756	+		PGA1_c23130	0.73	+0.7
2,398,764	+		PGA1_c23130	0.74	-0.3
2,398,790	-		PGA1_c23130	0.76	+0.6
2,398,827	+		PGA1_c23130	0.78	-0.7
2,398,853	+		PGA1_c23130	0.80	-0.2
2,398,861	-		PGA1_c23130	0.81	-1.3
2,398,920	+		PGA1_c23130	0.85	+0.7
2,398,932	+		PGA1_c23130	0.86	-0.6
2,398,961	+		PGA1_c23130	0.89	-0.5
2,399,060	+				+0.3
2,399,104	+				+1.0
2,399,123	-				-1.2
2,399,160	-				+0.6
2,399,160	-				+0.8
2,399,238	+				-2.1
2,399,251	+				+0.5
2,399,261	-				-2.2
2,399,263	+				+0.9
2,399,266	-				+0.3
2,399,280	-				-0.4
2,399,306	-		PGA1_c23140	0.12	+0.4
2,399,306	-		PGA1_c23140	0.12	+0.2
2,399,306	-		PGA1_c23140	0.12	+1.5
2,399,353	+		PGA1_c23140	0.17	+0.7
2,399,375	-		PGA1_c23140	0.19	+0.2
2,399,402	+		PGA1_c23140	0.22	+1.5
2,399,445	+		PGA1_c23140	0.26	-0.0
2,399,445	+		PGA1_c23140	0.26	+0.6
2,399,453	-		PGA1_c23140	0.27	-0.2
2,399,465	-		PGA1_c23140	0.28	+1.5
2,399,488	-		PGA1_c23140	0.31	-0.9
2,399,510	-		PGA1_c23140	0.33	+1.4
2,399,515	-		PGA1_c23140	0.33	+0.1
2,399,585	+		PGA1_c23140	0.40	+0.1
2,399,637	+		PGA1_c23140	0.45	+0.1
2,399,637	+		PGA1_c23140	0.45	+0.3
2,399,663	+		PGA1_c23140	0.48	+0.3
2,399,694	+		PGA1_c23140	0.51	+0.5
2,399,757	-		PGA1_c23140	0.58	-0.7
2,399,785	+		PGA1_c23140	0.60	+1.1
2,399,914	+		PGA1_c23140	0.73	+1.5
2,399,918	+		PGA1_c23140	0.74	-1.1
2,399,922	-		PGA1_c23140	0.74	+0.5
2,399,926	-		PGA1_c23140	0.74	+0.9
2,399,945	+		PGA1_c23140	0.76	+0.9
2,399,956	+		PGA1_c23140	0.78	-0.3
2,399,977	-		PGA1_c23140	0.80	-0.5
2,400,021	-		PGA1_c23140	0.84	+0.6
2,400,054	-		PGA1_c23140	0.87	+0.0
2,400,069	+		PGA1_c23140	0.89	-0.8
2,400,090	+				-1.2
2,400,103	-				-0.3
2,400,113	+				-0.7
2,400,118	+				-2.4
2,400,149	+				-1.1
2,400,158	+				-3.0
2,400,158	+				-1.2
2,400,158	+				-0.9
2,400,173	+				+0.0
2,400,173	+				+0.5
2,400,181	-				+0.7
2,400,181	-				+0.4
2,400,181	-				+0.1
2,400,181	-				+0.7
2,400,181	-				+0.2
2,400,181	-				-2.3
2,400,181	-				+0.3
2,400,210	-				-0.1
2,400,215	-				+0.7
2,400,234	-				+1.0
2,400,315	-		PGA1_c23150	0.13	-0.1
2,400,317	+		PGA1_c23150	0.13	+0.9
2,400,336	-		PGA1_c23150	0.15	+0.4
2,400,391	-		PGA1_c23150	0.20	+0.8
2,400,469	-		PGA1_c23150	0.28	-0.2
2,400,471	-		PGA1_c23150	0.28	-1.1
2,400,471	-		PGA1_c23150	0.28	-0.3
2,400,523	+		PGA1_c23150	0.33	+0.3
2,400,523	+		PGA1_c23150	0.33	+0.6
2,400,621	-		PGA1_c23150	0.43	+0.2
2,400,681	+		PGA1_c23150	0.49	+1.3
2,400,684	+		PGA1_c23150	0.50	-1.9
2,400,731	-		PGA1_c23150	0.54	+0.2
2,400,771	+		PGA1_c23150	0.58	-0.6
2,400,826	-		PGA1_c23150	0.64	+0.5
2,400,855	-		PGA1_c23150	0.67	+1.1
2,400,899	+		PGA1_c23150	0.71	-1.1
2,400,907	-		PGA1_c23150	0.72	-0.3
2,400,976	+		PGA1_c23150	0.79	+1.3
2,400,976	+		PGA1_c23150	0.79	-2.1
2,400,997	+		PGA1_c23150	0.81	+0.4
2,401,046	+		PGA1_c23150	0.86	-0.1
2,401,046	+		PGA1_c23150	0.86	+0.2
2,401,059	-		PGA1_c23150	0.87	+0.3
2,401,084	-		PGA1_c23150	0.90	-0.3