Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01480

Experiment: m.b. syringaldehyde 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01460 and PGA1_c01470 overlap by 4 nucleotidesPGA1_c01470 and PGA1_c01480 are separated by 6 nucleotidesPGA1_c01480 and PGA1_c01490 are separated by 414 nucleotidesPGA1_c01490 and PGA1_c01500 are separated by 15 nucleotides PGA1_c01460: PGA1_c01460 - Protein of unknown function (DUF3118)., at 142,737 to 143,561 _c01460 PGA1_c01470: PGA1_c01470 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 143,558 to 144,460 _c01470 PGA1_c01480: PGA1_c01480 - Protein of unknown function (DUF3118)., at 144,467 to 145,243 _c01480 PGA1_c01490: PGA1_c01490 - 30S ribosomal protein S12, at 145,658 to 146,029 _c01490 PGA1_c01500: PGA1_c01500 - 30S ribosomal protein S7, at 146,045 to 146,515 _c01500 Position (kb) 144 145 146Strain fitness (log2 ratio) -2 -1 0 1 2 3at 143.470 kb on - strand, within PGA1_c01460at 143.505 kb on + strandat 143.505 kb on + strandat 143.505 kb on + strandat 143.505 kb on + strandat 143.505 kb on + strandat 143.505 kb on + strandat 143.513 kb on - strandat 143.513 kb on - strandat 143.604 kb on - strandat 143.618 kb on - strandat 143.641 kb on + strandat 143.641 kb on + strandat 143.649 kb on - strand, within PGA1_c01470at 143.649 kb on - strand, within PGA1_c01470at 143.679 kb on + strand, within PGA1_c01470at 143.687 kb on - strand, within PGA1_c01470at 143.778 kb on + strand, within PGA1_c01470at 143.786 kb on + strand, within PGA1_c01470at 143.787 kb on + strand, within PGA1_c01470at 143.788 kb on + strand, within PGA1_c01470at 143.831 kb on + strand, within PGA1_c01470at 143.834 kb on + strand, within PGA1_c01470at 143.842 kb on - strand, within PGA1_c01470at 143.842 kb on - strand, within PGA1_c01470at 143.842 kb on - strand, within PGA1_c01470at 143.842 kb on - strand, within PGA1_c01470at 143.956 kb on - strand, within PGA1_c01470at 143.983 kb on - strand, within PGA1_c01470at 144.020 kb on + strand, within PGA1_c01470at 144.022 kb on - strand, within PGA1_c01470at 144.028 kb on - strand, within PGA1_c01470at 144.054 kb on + strand, within PGA1_c01470at 144.120 kb on - strand, within PGA1_c01470at 144.136 kb on - strand, within PGA1_c01470at 144.136 kb on - strand, within PGA1_c01470at 144.147 kb on + strand, within PGA1_c01470at 144.155 kb on - strand, within PGA1_c01470at 144.155 kb on - strand, within PGA1_c01470at 144.165 kb on - strand, within PGA1_c01470at 144.173 kb on - strand, within PGA1_c01470at 144.173 kb on - strand, within PGA1_c01470at 144.209 kb on + strand, within PGA1_c01470at 144.210 kb on - strand, within PGA1_c01470at 144.216 kb on + strand, within PGA1_c01470at 144.435 kb on + strandat 144.435 kb on + strandat 144.548 kb on + strand, within PGA1_c01480at 144.570 kb on + strand, within PGA1_c01480at 144.579 kb on - strand, within PGA1_c01480at 144.633 kb on + strand, within PGA1_c01480at 144.633 kb on + strand, within PGA1_c01480at 144.672 kb on - strand, within PGA1_c01480at 144.684 kb on + strand, within PGA1_c01480at 144.821 kb on - strand, within PGA1_c01480at 144.826 kb on - strand, within PGA1_c01480at 144.826 kb on - strand, within PGA1_c01480at 144.828 kb on + strand, within PGA1_c01480at 144.916 kb on - strand, within PGA1_c01480at 144.946 kb on - strand, within PGA1_c01480at 144.953 kb on - strand, within PGA1_c01480at 144.957 kb on + strand, within PGA1_c01480at 144.957 kb on + strand, within PGA1_c01480at 144.957 kb on + strand, within PGA1_c01480at 144.965 kb on - strand, within PGA1_c01480at 144.965 kb on - strand, within PGA1_c01480at 144.965 kb on - strand, within PGA1_c01480at 145.012 kb on - strand, within PGA1_c01480at 145.020 kb on + strand, within PGA1_c01480at 145.102 kb on - strand, within PGA1_c01480at 145.102 kb on - strand, within PGA1_c01480at 145.146 kb on + strand, within PGA1_c01480at 145.149 kb on - strand, within PGA1_c01480at 145.168 kb on + strandat 145.168 kb on + strandat 145.168 kb on + strandat 145.168 kb on + strandat 145.168 kb on + strandat 145.168 kb on + strandat 145.168 kb on + strandat 145.168 kb on + strandat 145.176 kb on - strandat 145.176 kb on - strandat 145.176 kb on - strandat 145.176 kb on - strandat 145.176 kb on - strandat 145.176 kb on - strandat 145.178 kb on + strandat 145.230 kb on + strandat 145.230 kb on + strandat 145.230 kb on + strandat 145.238 kb on - strandat 145.254 kb on - strandat 145.273 kb on + strandat 145.273 kb on + strandat 145.273 kb on + strandat 145.273 kb on + strandat 145.273 kb on + strandat 145.281 kb on - strandat 145.296 kb on + strandat 145.304 kb on - strandat 145.311 kb on - strandat 145.351 kb on - strandat 145.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 2 mM
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143,470 - PGA1_c01460 0.89 +0.8
143,505 + +1.2
143,505 + -0.5
143,505 + -0.3
143,505 + -1.9
143,505 + -0.7
143,505 + +0.7
143,513 - -0.7
143,513 - -0.4
143,604 - +0.2
143,618 - +0.2
143,641 + +0.9
143,641 + +0.3
143,649 - PGA1_c01470 0.10 -0.2
143,649 - PGA1_c01470 0.10 -0.3
143,679 + PGA1_c01470 0.13 -0.9
143,687 - PGA1_c01470 0.14 +0.3
143,778 + PGA1_c01470 0.24 +0.1
143,786 + PGA1_c01470 0.25 -0.5
143,787 + PGA1_c01470 0.25 +0.1
143,788 + PGA1_c01470 0.25 -0.3
143,831 + PGA1_c01470 0.30 -0.5
143,834 + PGA1_c01470 0.31 +0.2
143,842 - PGA1_c01470 0.31 +0.8
143,842 - PGA1_c01470 0.31 -0.3
143,842 - PGA1_c01470 0.31 -0.9
143,842 - PGA1_c01470 0.31 -0.3
143,956 - PGA1_c01470 0.44 -0.2
143,983 - PGA1_c01470 0.47 +0.9
144,020 + PGA1_c01470 0.51 +0.9
144,022 - PGA1_c01470 0.51 +0.4
144,028 - PGA1_c01470 0.52 +0.6
144,054 + PGA1_c01470 0.55 -0.1
144,120 - PGA1_c01470 0.62 -0.4
144,136 - PGA1_c01470 0.64 +0.4
144,136 - PGA1_c01470 0.64 +0.4
144,147 + PGA1_c01470 0.65 -1.6
144,155 - PGA1_c01470 0.66 +0.8
144,155 - PGA1_c01470 0.66 -1.0
144,165 - PGA1_c01470 0.67 +0.9
144,173 - PGA1_c01470 0.68 +0.5
144,173 - PGA1_c01470 0.68 +0.2
144,209 + PGA1_c01470 0.72 +0.5
144,210 - PGA1_c01470 0.72 +0.0
144,216 + PGA1_c01470 0.73 -0.1
144,435 + -0.7
144,435 + -1.5
144,548 + PGA1_c01480 0.10 -0.1
144,570 + PGA1_c01480 0.13 -1.8
144,579 - PGA1_c01480 0.14 -1.8
144,633 + PGA1_c01480 0.21 +0.2
144,633 + PGA1_c01480 0.21 +0.4
144,672 - PGA1_c01480 0.26 +0.2
144,684 + PGA1_c01480 0.28 +2.8
144,821 - PGA1_c01480 0.46 +0.2
144,826 - PGA1_c01480 0.46 +1.0
144,826 - PGA1_c01480 0.46 +0.2
144,828 + PGA1_c01480 0.46 -0.0
144,916 - PGA1_c01480 0.58 +0.5
144,946 - PGA1_c01480 0.62 +1.7
144,953 - PGA1_c01480 0.63 +1.3
144,957 + PGA1_c01480 0.63 -0.7
144,957 + PGA1_c01480 0.63 +0.1
144,957 + PGA1_c01480 0.63 +0.2
144,965 - PGA1_c01480 0.64 -0.8
144,965 - PGA1_c01480 0.64 +0.4
144,965 - PGA1_c01480 0.64 -1.3
145,012 - PGA1_c01480 0.70 -0.0
145,020 + PGA1_c01480 0.71 +0.5
145,102 - PGA1_c01480 0.82 +0.2
145,102 - PGA1_c01480 0.82 +0.5
145,146 + PGA1_c01480 0.87 +1.0
145,149 - PGA1_c01480 0.88 +0.6
145,168 + +0.2
145,168 + -0.0
145,168 + -0.8
145,168 + -0.3
145,168 + +0.5
145,168 + +0.6
145,168 + +0.0
145,168 + +0.8
145,176 - +0.1
145,176 - +0.1
145,176 - -0.2
145,176 - +1.1
145,176 - +0.1
145,176 - +0.8
145,178 + -0.2
145,230 + +0.1
145,230 + +0.0
145,230 + +1.0
145,238 - -0.7
145,254 - +0.1
145,273 + -0.3
145,273 + +0.0
145,273 + +0.6
145,273 + +0.5
145,273 + -1.9
145,281 - +0.1
145,296 + -0.9
145,304 - -0.9
145,311 - -1.2
145,351 - -0.3
145,394 - +0.1

Or see this region's nucleotide sequence