Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25505 and BWI76_RS25510 are separated by 219 nucleotides BWI76_RS25510 and BWI76_RS25515 are separated by 77 nucleotides
BWI76_RS25505: BWI76_RS25505 - RNase E specificity factor CsrD, at 5,301,853 to 5,303,793
_RS25505
BWI76_RS25510: BWI76_RS25510 - oxidoreductase, at 5,304,013 to 5,304,987
_RS25510
BWI76_RS25515: BWI76_RS25515 - sulfoxide reductase, at 5,305,065 to 5,306,066
_RS25515
Position (kb) 5304
5305 Strain fitness (log2 ratio) -1
0
1
2 at 5303.224 kb on + strand, within BWI76_RS25505 at 5303.232 kb on - strand, within BWI76_RS25505 at 5303.386 kb on + strand, within BWI76_RS25505 at 5303.423 kb on + strand, within BWI76_RS25505 at 5303.530 kb on + strand, within BWI76_RS25505 at 5303.538 kb on - strand, within BWI76_RS25505 at 5303.538 kb on - strand at 5303.624 kb on - strand at 5303.899 kb on + strand at 5303.969 kb on - strand at 5303.996 kb on + strand at 5304.112 kb on + strand, within BWI76_RS25510 at 5304.139 kb on - strand, within BWI76_RS25510 at 5304.248 kb on - strand, within BWI76_RS25510 at 5304.364 kb on - strand, within BWI76_RS25510 at 5304.468 kb on - strand, within BWI76_RS25510 at 5304.756 kb on + strand, within BWI76_RS25510 at 5304.827 kb on - strand, within BWI76_RS25510 at 5304.972 kb on + strand at 5305.021 kb on - strand at 5305.037 kb on - strand at 5305.165 kb on + strand at 5305.165 kb on + strand at 5305.173 kb on - strand, within BWI76_RS25515 at 5305.228 kb on + strand, within BWI76_RS25515 at 5305.264 kb on - strand, within BWI76_RS25515 at 5305.346 kb on + strand, within BWI76_RS25515 at 5305.354 kb on - strand, within BWI76_RS25515 at 5305.354 kb on - strand, within BWI76_RS25515 at 5305.439 kb on + strand, within BWI76_RS25515 at 5305.620 kb on - strand, within BWI76_RS25515 at 5305.716 kb on - strand, within BWI76_RS25515 at 5305.726 kb on - strand at 5305.760 kb on - strand, within BWI76_RS25515 at 5305.837 kb on + strand, within BWI76_RS25515
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 5,303,224 + BWI76_RS25505 0.71 +0.7 5,303,232 - BWI76_RS25505 0.71 +0.5 5,303,386 + BWI76_RS25505 0.79 -0.1 5,303,423 + BWI76_RS25505 0.81 +0.4 5,303,530 + BWI76_RS25505 0.86 +0.4 5,303,538 - BWI76_RS25505 0.87 +0.9 5,303,538 - +2.1 5,303,624 - +0.8 5,303,899 + +1.0 5,303,969 - +0.1 5,303,996 + +0.5 5,304,112 + BWI76_RS25510 0.10 -0.5 5,304,139 - BWI76_RS25510 0.13 +0.4 5,304,248 - BWI76_RS25510 0.24 +0.1 5,304,364 - BWI76_RS25510 0.36 +0.1 5,304,468 - BWI76_RS25510 0.47 -0.7 5,304,756 + BWI76_RS25510 0.76 -0.3 5,304,827 - BWI76_RS25510 0.83 -0.3 5,304,972 + +0.0 5,305,021 - -0.5 5,305,037 - +0.4 5,305,165 + +0.9 5,305,165 + -0.0 5,305,173 - BWI76_RS25515 0.11 -0.1 5,305,228 + BWI76_RS25515 0.16 -1.1 5,305,264 - BWI76_RS25515 0.20 +0.3 5,305,346 + BWI76_RS25515 0.28 -1.7 5,305,354 - BWI76_RS25515 0.29 -0.1 5,305,354 - BWI76_RS25515 0.29 -0.1 5,305,439 + BWI76_RS25515 0.37 -0.2 5,305,620 - BWI76_RS25515 0.55 -0.3 5,305,716 - BWI76_RS25515 0.65 -0.2 5,305,726 - -0.6 5,305,760 - BWI76_RS25515 0.69 -0.7 5,305,837 + BWI76_RS25515 0.77 +0.1
Or see this region's nucleotide sequence