Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS25510

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS25505 and BWI76_RS25510 are separated by 219 nucleotidesBWI76_RS25510 and BWI76_RS25515 are separated by 77 nucleotides BWI76_RS25505: BWI76_RS25505 - RNase E specificity factor CsrD, at 5,301,853 to 5,303,793 _RS25505 BWI76_RS25510: BWI76_RS25510 - oxidoreductase, at 5,304,013 to 5,304,987 _RS25510 BWI76_RS25515: BWI76_RS25515 - sulfoxide reductase, at 5,305,065 to 5,306,066 _RS25515 Position (kb) 5304 5305Strain fitness (log2 ratio) -1 0 1 2at 5303.224 kb on + strand, within BWI76_RS25505at 5303.232 kb on - strand, within BWI76_RS25505at 5303.386 kb on + strand, within BWI76_RS25505at 5303.423 kb on + strand, within BWI76_RS25505at 5303.530 kb on + strand, within BWI76_RS25505at 5303.538 kb on - strand, within BWI76_RS25505at 5303.538 kb on - strandat 5303.624 kb on - strandat 5303.899 kb on + strandat 5303.969 kb on - strandat 5303.996 kb on + strandat 5304.112 kb on + strand, within BWI76_RS25510at 5304.139 kb on - strand, within BWI76_RS25510at 5304.248 kb on - strand, within BWI76_RS25510at 5304.364 kb on - strand, within BWI76_RS25510at 5304.468 kb on - strand, within BWI76_RS25510at 5304.756 kb on + strand, within BWI76_RS25510at 5304.827 kb on - strand, within BWI76_RS25510at 5304.972 kb on + strandat 5305.021 kb on - strandat 5305.037 kb on - strandat 5305.165 kb on + strandat 5305.165 kb on + strandat 5305.173 kb on - strand, within BWI76_RS25515at 5305.228 kb on + strand, within BWI76_RS25515at 5305.264 kb on - strand, within BWI76_RS25515at 5305.346 kb on + strand, within BWI76_RS25515at 5305.354 kb on - strand, within BWI76_RS25515at 5305.354 kb on - strand, within BWI76_RS25515at 5305.439 kb on + strand, within BWI76_RS25515at 5305.620 kb on - strand, within BWI76_RS25515at 5305.716 kb on - strand, within BWI76_RS25515at 5305.726 kb on - strandat 5305.760 kb on - strand, within BWI76_RS25515at 5305.837 kb on + strand, within BWI76_RS25515

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
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5,303,224 + BWI76_RS25505 0.71 +0.7
5,303,232 - BWI76_RS25505 0.71 +0.5
5,303,386 + BWI76_RS25505 0.79 -0.1
5,303,423 + BWI76_RS25505 0.81 +0.4
5,303,530 + BWI76_RS25505 0.86 +0.4
5,303,538 - BWI76_RS25505 0.87 +0.9
5,303,538 - +2.1
5,303,624 - +0.8
5,303,899 + +1.0
5,303,969 - +0.1
5,303,996 + +0.5
5,304,112 + BWI76_RS25510 0.10 -0.5
5,304,139 - BWI76_RS25510 0.13 +0.4
5,304,248 - BWI76_RS25510 0.24 +0.1
5,304,364 - BWI76_RS25510 0.36 +0.1
5,304,468 - BWI76_RS25510 0.47 -0.7
5,304,756 + BWI76_RS25510 0.76 -0.3
5,304,827 - BWI76_RS25510 0.83 -0.3
5,304,972 + +0.0
5,305,021 - -0.5
5,305,037 - +0.4
5,305,165 + +0.9
5,305,165 + -0.0
5,305,173 - BWI76_RS25515 0.11 -0.1
5,305,228 + BWI76_RS25515 0.16 -1.1
5,305,264 - BWI76_RS25515 0.20 +0.3
5,305,346 + BWI76_RS25515 0.28 -1.7
5,305,354 - BWI76_RS25515 0.29 -0.1
5,305,354 - BWI76_RS25515 0.29 -0.1
5,305,439 + BWI76_RS25515 0.37 -0.2
5,305,620 - BWI76_RS25515 0.55 -0.3
5,305,716 - BWI76_RS25515 0.65 -0.2
5,305,726 - -0.6
5,305,760 - BWI76_RS25515 0.69 -0.7
5,305,837 + BWI76_RS25515 0.77 +0.1

Or see this region's nucleotide sequence