Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23200

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23185 and BWI76_RS23190 overlap by 1 nucleotidesBWI76_RS23190 and BWI76_RS23195 are separated by 4 nucleotidesBWI76_RS23195 and BWI76_RS23200 overlap by 16 nucleotidesBWI76_RS23200 and BWI76_RS23205 are separated by 91 nucleotides BWI76_RS23185: BWI76_RS23185 - propanediol utilization: polyhedral bodies pduT, at 4,830,836 to 4,831,390 _RS23185 BWI76_RS23190: BWI76_RS23190 - propanediol utilization protein PduU, at 4,831,390 to 4,831,740 _RS23190 BWI76_RS23195: BWI76_RS23195 - ethanolamine utilization protein EutP, at 4,831,745 to 4,832,197 _RS23195 BWI76_RS23200: BWI76_RS23200 - propionate kinase, at 4,832,182 to 4,833,396 _RS23200 BWI76_RS23205: BWI76_RS23205 - propanediol utilization protein PduX, at 4,833,488 to 4,834,354 _RS23205 Position (kb) 4832 4833 4834Strain fitness (log2 ratio) -1 0 1at 4831.420 kb on + strandat 4831.420 kb on + strandat 4831.428 kb on - strand, within BWI76_RS23190at 4831.469 kb on - strand, within BWI76_RS23190at 4831.538 kb on + strand, within BWI76_RS23190at 4831.538 kb on + strand, within BWI76_RS23190at 4831.903 kb on + strand, within BWI76_RS23195at 4831.911 kb on - strand, within BWI76_RS23195at 4831.921 kb on - strand, within BWI76_RS23195at 4832.055 kb on - strand, within BWI76_RS23195at 4832.177 kb on + strandat 4832.253 kb on + strandat 4832.455 kb on + strand, within BWI76_RS23200at 4832.711 kb on + strand, within BWI76_RS23200at 4832.898 kb on + strand, within BWI76_RS23200at 4832.933 kb on + strand, within BWI76_RS23200at 4832.967 kb on + strand, within BWI76_RS23200at 4833.292 kb on - strandat 4833.292 kb on - strandat 4833.309 kb on + strandat 4833.363 kb on + strandat 4833.580 kb on + strand, within BWI76_RS23205at 4833.670 kb on + strand, within BWI76_RS23205at 4833.745 kb on + strand, within BWI76_RS23205at 4833.863 kb on - strand, within BWI76_RS23205at 4833.887 kb on + strand, within BWI76_RS23205at 4834.041 kb on - strand, within BWI76_RS23205at 4834.336 kb on - strandat 4834.338 kb on + strandat 4834.340 kb on + strandat 4834.346 kb on - strandat 4834.348 kb on + strandat 4834.348 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
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4,831,420 + +0.6
4,831,420 + +1.1
4,831,428 - BWI76_RS23190 0.11 +0.3
4,831,469 - BWI76_RS23190 0.23 +0.1
4,831,538 + BWI76_RS23190 0.42 +0.1
4,831,538 + BWI76_RS23190 0.42 -0.3
4,831,903 + BWI76_RS23195 0.35 -0.6
4,831,911 - BWI76_RS23195 0.37 -1.3
4,831,921 - BWI76_RS23195 0.39 +0.6
4,832,055 - BWI76_RS23195 0.68 +0.5
4,832,177 + -0.4
4,832,253 + -0.0
4,832,455 + BWI76_RS23200 0.22 -0.2
4,832,711 + BWI76_RS23200 0.44 -0.4
4,832,898 + BWI76_RS23200 0.59 +0.1
4,832,933 + BWI76_RS23200 0.62 -0.5
4,832,967 + BWI76_RS23200 0.65 -0.2
4,833,292 - -0.3
4,833,292 - -0.4
4,833,309 + -0.7
4,833,363 + -0.3
4,833,580 + BWI76_RS23205 0.11 -0.3
4,833,670 + BWI76_RS23205 0.21 -0.2
4,833,745 + BWI76_RS23205 0.30 +0.7
4,833,863 - BWI76_RS23205 0.43 +0.0
4,833,887 + BWI76_RS23205 0.46 -0.2
4,834,041 - BWI76_RS23205 0.64 +0.2
4,834,336 - -0.0
4,834,338 + -0.5
4,834,340 + -0.8
4,834,346 - -0.0
4,834,348 + +0.8
4,834,348 + +0.4

Or see this region's nucleotide sequence