Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23185 and BWI76_RS23190 overlap by 1 nucleotides BWI76_RS23190 and BWI76_RS23195 are separated by 4 nucleotides BWI76_RS23195 and BWI76_RS23200 overlap by 16 nucleotides BWI76_RS23200 and BWI76_RS23205 are separated by 91 nucleotides
BWI76_RS23185: BWI76_RS23185 - propanediol utilization: polyhedral bodies pduT, at 4,830,836 to 4,831,390
_RS23185
BWI76_RS23190: BWI76_RS23190 - propanediol utilization protein PduU, at 4,831,390 to 4,831,740
_RS23190
BWI76_RS23195: BWI76_RS23195 - ethanolamine utilization protein EutP, at 4,831,745 to 4,832,197
_RS23195
BWI76_RS23200: BWI76_RS23200 - propionate kinase, at 4,832,182 to 4,833,396
_RS23200
BWI76_RS23205: BWI76_RS23205 - propanediol utilization protein PduX, at 4,833,488 to 4,834,354
_RS23205
Position (kb) 4832
4833
4834 Strain fitness (log2 ratio) -1
0
1 at 4831.420 kb on + strand at 4831.420 kb on + strand at 4831.428 kb on - strand, within BWI76_RS23190 at 4831.469 kb on - strand, within BWI76_RS23190 at 4831.538 kb on + strand, within BWI76_RS23190 at 4831.538 kb on + strand, within BWI76_RS23190 at 4831.903 kb on + strand, within BWI76_RS23195 at 4831.911 kb on - strand, within BWI76_RS23195 at 4831.921 kb on - strand, within BWI76_RS23195 at 4832.055 kb on - strand, within BWI76_RS23195 at 4832.177 kb on + strand at 4832.253 kb on + strand at 4832.455 kb on + strand, within BWI76_RS23200 at 4832.711 kb on + strand, within BWI76_RS23200 at 4832.898 kb on + strand, within BWI76_RS23200 at 4832.933 kb on + strand, within BWI76_RS23200 at 4832.967 kb on + strand, within BWI76_RS23200 at 4833.292 kb on - strand at 4833.292 kb on - strand at 4833.309 kb on + strand at 4833.363 kb on + strand at 4833.580 kb on + strand, within BWI76_RS23205 at 4833.670 kb on + strand, within BWI76_RS23205 at 4833.745 kb on + strand, within BWI76_RS23205 at 4833.863 kb on - strand, within BWI76_RS23205 at 4833.887 kb on + strand, within BWI76_RS23205 at 4834.041 kb on - strand, within BWI76_RS23205 at 4834.336 kb on - strand at 4834.338 kb on + strand at 4834.340 kb on + strand at 4834.346 kb on - strand at 4834.348 kb on + strand at 4834.348 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 4,831,420 + +0.6 4,831,420 + +1.1 4,831,428 - BWI76_RS23190 0.11 +0.3 4,831,469 - BWI76_RS23190 0.23 +0.1 4,831,538 + BWI76_RS23190 0.42 +0.1 4,831,538 + BWI76_RS23190 0.42 -0.3 4,831,903 + BWI76_RS23195 0.35 -0.6 4,831,911 - BWI76_RS23195 0.37 -1.3 4,831,921 - BWI76_RS23195 0.39 +0.6 4,832,055 - BWI76_RS23195 0.68 +0.5 4,832,177 + -0.4 4,832,253 + -0.0 4,832,455 + BWI76_RS23200 0.22 -0.2 4,832,711 + BWI76_RS23200 0.44 -0.4 4,832,898 + BWI76_RS23200 0.59 +0.1 4,832,933 + BWI76_RS23200 0.62 -0.5 4,832,967 + BWI76_RS23200 0.65 -0.2 4,833,292 - -0.3 4,833,292 - -0.4 4,833,309 + -0.7 4,833,363 + -0.3 4,833,580 + BWI76_RS23205 0.11 -0.3 4,833,670 + BWI76_RS23205 0.21 -0.2 4,833,745 + BWI76_RS23205 0.30 +0.7 4,833,863 - BWI76_RS23205 0.43 +0.0 4,833,887 + BWI76_RS23205 0.46 -0.2 4,834,041 - BWI76_RS23205 0.64 +0.2 4,834,336 - -0.0 4,834,338 + -0.5 4,834,340 + -0.8 4,834,346 - -0.0 4,834,348 + +0.8 4,834,348 + +0.4
Or see this region's nucleotide sequence