Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22330 and BWI76_RS22335 overlap by 4 nucleotides BWI76_RS22335 and BWI76_RS22340 are separated by 82 nucleotides BWI76_RS22340 and BWI76_RS22345 are separated by 208 nucleotides
BWI76_RS22330: BWI76_RS22330 - formate hydrogenlyase subunit 3, at 4,654,804 to 4,656,630
_RS22330
BWI76_RS22335: BWI76_RS22335 - 4Fe-4S ferredoxin, at 4,656,627 to 4,657,235
_RS22335
BWI76_RS22340: BWI76_RS22340 - formate hydrogenlyase regulatory protein HycA, at 4,657,318 to 4,657,767
_RS22340
BWI76_RS22345: BWI76_RS22345 - hydrogenase maturation nickel metallochaperone HypA, at 4,657,976 to 4,658,326
_RS22345
Position (kb) 4656
4657
4658 Strain fitness (log2 ratio) -1
0
1
2
3 at 4655.682 kb on - strand, within BWI76_RS22330 at 4655.909 kb on + strand, within BWI76_RS22330 at 4656.349 kb on - strand, within BWI76_RS22330 at 4656.400 kb on + strand, within BWI76_RS22330 at 4656.438 kb on + strand, within BWI76_RS22330 at 4656.474 kb on - strand at 4656.770 kb on - strand, within BWI76_RS22335 at 4656.836 kb on + strand, within BWI76_RS22335 at 4656.849 kb on - strand, within BWI76_RS22335 at 4656.883 kb on + strand, within BWI76_RS22335 at 4656.921 kb on - strand, within BWI76_RS22335 at 4657.292 kb on - strand at 4657.609 kb on - strand, within BWI76_RS22340 at 4657.659 kb on + strand, within BWI76_RS22340 at 4657.659 kb on + strand, within BWI76_RS22340 at 4657.667 kb on - strand, within BWI76_RS22340 at 4657.671 kb on + strand, within BWI76_RS22340 at 4657.783 kb on + strand at 4657.783 kb on + strand at 4657.989 kb on + strand at 4657.989 kb on + strand at 4657.997 kb on - strand at 4658.045 kb on + strand, within BWI76_RS22345 at 4658.102 kb on + strand, within BWI76_RS22345 at 4658.151 kb on + strand, within BWI76_RS22345 at 4658.161 kb on + strand, within BWI76_RS22345 at 4658.174 kb on - strand, within BWI76_RS22345
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 4,655,682 - BWI76_RS22330 0.48 +0.0 4,655,909 + BWI76_RS22330 0.60 +0.5 4,656,349 - BWI76_RS22330 0.85 +0.4 4,656,400 + BWI76_RS22330 0.87 +0.3 4,656,438 + BWI76_RS22330 0.89 -0.3 4,656,474 - +0.9 4,656,770 - BWI76_RS22335 0.23 +0.2 4,656,836 + BWI76_RS22335 0.34 -0.2 4,656,849 - BWI76_RS22335 0.36 +0.1 4,656,883 + BWI76_RS22335 0.42 +2.8 4,656,921 - BWI76_RS22335 0.48 +0.2 4,657,292 - -0.6 4,657,609 - BWI76_RS22340 0.65 -0.4 4,657,659 + BWI76_RS22340 0.76 -0.1 4,657,659 + BWI76_RS22340 0.76 +0.1 4,657,667 - BWI76_RS22340 0.78 -0.6 4,657,671 + BWI76_RS22340 0.78 -0.4 4,657,783 + -0.3 4,657,783 + -1.0 4,657,989 + +1.7 4,657,989 + -0.9 4,657,997 - -0.2 4,658,045 + BWI76_RS22345 0.20 -0.4 4,658,102 + BWI76_RS22345 0.36 -0.6 4,658,151 + BWI76_RS22345 0.50 +0.2 4,658,161 + BWI76_RS22345 0.53 -0.4 4,658,174 - BWI76_RS22345 0.56 +0.7
Or see this region's nucleotide sequence