Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21985

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
4,591,939	-		BWI76_RS21975	0.45	-0.6
4,591,939	-		BWI76_RS21975	0.45	+0.0
4,591,939	-		BWI76_RS21975	0.45	-0.1
4,591,939	-		BWI76_RS21975	0.45	+0.6
4,591,939	-		BWI76_RS21975	0.45	+0.6
4,591,939	-		BWI76_RS21975	0.45	+1.5
4,591,939	-		BWI76_RS21975	0.45	-0.8
4,591,941	+		BWI76_RS21975	0.45	+0.1
4,591,949	-		BWI76_RS21975	0.46	-0.2
4,591,949	-		BWI76_RS21975	0.46	+0.5
4,591,949	-		BWI76_RS21975	0.46	+0.1
4,591,949	-		BWI76_RS21975	0.46	-0.3
4,591,949	-		BWI76_RS21975	0.46	+0.1
4,591,949	-		BWI76_RS21975	0.46	+0.0
4,591,961	-		BWI76_RS21975	0.48	+0.1
4,591,972	+		BWI76_RS21975	0.50	-1.9
4,592,005	-		BWI76_RS21975	0.56	-1.3
4,592,015	-		BWI76_RS21975	0.57	+0.6
4,592,042	+		BWI76_RS21975	0.62	-0.7
4,592,132	+		BWI76_RS21975	0.77	+0.2
4,592,132	+		BWI76_RS21975	0.77	+0.2
4,592,132	+		BWI76_RS21975	0.77	+0.8
4,592,136	+		BWI76_RS21975	0.78	+0.6
4,592,136	+		BWI76_RS21975	0.78	-1.6
4,592,142	+		BWI76_RS21975	0.79	+1.3
4,592,151	+		BWI76_RS21975	0.80	+0.4
4,592,170	+		BWI76_RS21975	0.83	+0.0
4,592,172	-				+0.6
4,592,175	+		BWI76_RS21975	0.84	+0.8
4,592,175	+		BWI76_RS21975	0.84	+0.1
4,592,175	+		BWI76_RS21975	0.84	+0.3
4,592,175	+		BWI76_RS21975	0.84	+0.6
4,592,175	+		BWI76_RS21975	0.84	-0.2
4,592,175	+		BWI76_RS21975	0.84	-0.3
4,592,175	+		BWI76_RS21975	0.84	-0.0
4,592,175	+		BWI76_RS21975	0.84	-1.9
4,592,175	+		BWI76_RS21975	0.84	+0.3
4,592,175	+		BWI76_RS21975	0.84	-2.4
4,592,175	+		BWI76_RS21975	0.84	-0.7
4,592,190	+		BWI76_RS21975	0.87	+0.1
4,592,190	+		BWI76_RS21975	0.87	+0.7
4,592,190	+		BWI76_RS21975	0.87	+0.8
4,592,190	+		BWI76_RS21975	0.87	+0.9
4,592,190	+		BWI76_RS21975	0.87	-0.6
4,592,190	+		BWI76_RS21975	0.87	+0.4
4,592,190	+		BWI76_RS21975	0.87	+0.3
4,592,190	+		BWI76_RS21975	0.87	+0.2
4,592,190	+		BWI76_RS21975	0.87	-0.5
4,592,193	-		BWI76_RS21975	0.87	-0.6
4,592,198	+		BWI76_RS21975	0.88	-1.6
4,592,198	+				+1.4
4,592,198	-		BWI76_RS21975	0.88	-0.1
4,592,198	-		BWI76_RS21975	0.88	-0.0
4,592,198	-		BWI76_RS21975	0.88	-0.1
4,592,198	-		BWI76_RS21975	0.88	+3.1
4,592,198	-		BWI76_RS21975	0.88	-0.1
4,592,198	-		BWI76_RS21975	0.88	+0.4
4,592,198	-				+0.9
4,592,198	-		BWI76_RS21975	0.88	+0.4
4,592,198	-		BWI76_RS21975	0.88	-0.3
4,592,203	+		BWI76_RS21975	0.89	+0.7
4,592,203	+		BWI76_RS21975	0.89	+0.2
4,592,203	+				+0.5
4,592,206	-		BWI76_RS21975	0.89	+0.9
4,592,211	-				+0.6
4,592,211	-				-0.3
4,592,211	-				+0.1
4,592,211	-				-0.5
4,592,211	-				+0.7
4,592,211	-				-0.2
4,592,211	-				-0.7
4,592,211	-				-0.5
4,592,215	+				+0.4
4,592,215	+				+0.2
4,592,216	+				-0.8
4,592,221	+				+1.5
4,592,229	-				+0.5
4,592,231	-				-0.7
4,592,231	-				+1.2
4,592,231	-				+0.9
4,592,231	-				-0.1
4,592,231	-				+0.2
4,592,231	-				-0.3
4,592,310	-				-0.7
4,592,315	+				-1.1
4,592,315	+				+1.2
4,592,315	+				-0.5
4,592,315	+				-0.3
4,592,315	+				+0.6
4,592,315	+				+0.1
4,592,315	+				+0.3
4,592,315	+				+0.1
4,592,315	+				+0.0
4,592,315	+				-1.3
4,592,315	+				+1.1
4,592,315	+				-0.1
4,592,315	+				+1.2
4,592,315	+				-1.0
4,592,315	+				-0.3
4,592,315	+				+0.4
4,592,315	+				+0.4
4,592,315	+				+0.6
4,592,315	+				+0.1
4,592,315	+				+0.9
4,592,315	+				-0.8
4,592,315	+				+1.2
4,592,315	+				-0.8
4,592,315	+				+1.2
4,592,315	+				+0.2
4,592,315	+				-0.6
4,592,315	+				-1.8
4,592,315	+				-0.7
4,592,315	+				-1.7
4,592,315	+				+0.5
4,592,315	+				+0.9
4,592,315	+				-2.1
4,592,315	+				+0.4
4,592,315	+				+0.4
4,592,315	+				+0.7
4,592,315	+				-1.1
4,592,315	+				+0.6
4,592,315	+				+0.7
4,592,315	+				-0.0
4,592,315	+				-1.2
4,592,315	+				-1.9
4,592,315	+				+1.1
4,592,315	+				-0.5
4,592,315	+				+0.4
4,592,315	+				+0.3
4,592,315	+				+1.8
4,592,315	+				+1.0
4,592,315	+				-0.2
4,592,315	+				-0.9
4,592,315	+				-0.0
4,592,315	+				-0.6
4,592,315	+				-0.1
4,592,315	+				-0.3
4,592,315	+				+0.4
4,592,315	+				+0.6
4,592,315	+				+0.7
4,592,315	+				-0.9
4,592,315	+				-0.1
4,592,315	+				+0.2
4,592,315	+				-0.8
4,592,315	+				-0.4
4,592,315	+				+0.3
4,592,315	+				+0.3
4,592,315	+				+0.9
4,592,315	+				+0.5
4,592,315	+				-1.8
4,592,315	+				-1.6
4,592,315	+				-0.8
4,592,315	+				-0.0
4,592,315	+				+0.8
4,592,315	+				+0.5
4,592,316	+				+0.0
4,592,316	+				-0.5
4,592,316	+				-0.3
4,592,316	+				-0.2
4,592,323	-				+0.3
4,592,323	-				-0.4
4,592,323	-				-0.6
4,592,323	-				+0.1
4,592,323	-				-0.3
4,592,323	-				+0.5
4,592,323	-				+0.9
4,592,323	-				-0.2
4,592,323	-				-0.1
4,592,323	-				-0.6
4,592,323	-				-0.2
4,592,323	-				+0.6
4,592,323	-				+0.1
4,592,323	-				-0.3
4,592,323	-				-0.1
4,592,323	-				-0.3
4,592,323	-				+0.6
4,592,323	-				+0.3
4,592,323	-				-1.5
4,592,323	-				-1.2
4,592,323	-				-0.3
4,592,323	-				-1.0
4,592,323	-				-0.1
4,592,323	-				+0.8
4,592,323	-				-0.2
4,592,323	-				-0.6
4,592,323	-				+1.4
4,592,323	-				-0.3
4,592,323	-				-1.6
4,592,323	-				+0.2
4,592,323	-				+0.7
4,592,323	-				+0.1
4,592,323	-				-0.5
4,592,323	-				+0.5
4,592,323	-				+0.3
4,592,323	-				-0.2
4,592,323	-				-0.0
4,592,323	-				-1.1
4,592,323	-				+0.1
4,592,323	-				+1.3
4,592,323	-				+1.4
4,592,323	-				+0.8
4,592,323	-				-0.2
4,592,323	-				-0.6
4,592,323	-				+0.1
4,592,323	-				-2.3
4,592,323	-				+0.5
4,592,323	-				-0.1
4,592,323	-				-0.2
4,592,323	-				+0.6
4,592,323	-				+0.3
4,592,323	-				+0.1
4,592,323	-				-0.1
4,592,323	-				+0.9
4,592,323	-				-0.5
4,592,323	-				-0.2
4,592,323	-				-0.2
4,592,323	-				+0.1
4,592,323	-				-0.1
4,592,323	-				+0.2
4,592,323	-				-0.7
4,592,323	-				-1.3
4,592,323	-				-0.2
4,592,323	-				-0.1
4,592,323	-				+0.3
4,592,323	-				+0.7
4,592,323	-				-0.2
4,592,323	-				+0.5
4,592,323	-				-0.5
4,592,323	-				+0.1
4,592,323	-				+0.3
4,592,323	-				-0.4
4,592,323	-				-1.5
4,592,323	-				+0.4
4,592,323	-				+0.3
4,592,323	-				+0.4
4,592,323	-				-1.4
4,592,323	-				+0.3
4,592,323	-				+0.0
4,592,323	-				-0.6
4,592,323	-				-0.6
4,592,323	-				+1.1
4,592,323	-				+0.6
4,592,323	-				-0.1
4,592,323	-				-0.1
4,592,323	-				+0.4
4,592,323	-				-0.1
4,592,323	-				+0.2
4,592,323	-				+0.5
4,592,323	-				+0.4
4,592,323	-				-0.0
4,592,323	-				+0.0
4,592,323	-				+0.2
4,592,323	-				+0.1
4,592,323	-				+0.3
4,592,323	-				-0.3
4,592,323	-				+0.4
4,592,323	-				+0.7
4,592,323	-				-0.3
4,592,323	-				+0.0
4,592,323	-				-0.1
4,592,323	-				-1.2
4,592,323	-				-0.1
4,592,323	-				-0.1
4,592,323	-				-0.4
4,592,323	-				+0.1
4,592,323	-				+0.7
4,592,323	-				+0.0
4,592,323	-				+0.8
4,592,323	-				+0.7
4,592,323	-				+0.5
4,592,323	-				+0.6
4,592,323	-				-0.6
4,592,323	-				-1.1
4,592,323	-				+0.4
4,592,323	-				-0.6
4,592,323	-				+0.6
4,592,323	-				+0.2
4,592,323	-				+0.4
4,592,323	-				-0.1
4,592,323	-				-0.4
4,592,323	-				-0.4
4,592,323	-				-1.5
4,592,323	-				-0.1
4,592,323	-				+2.1
4,592,323	-				-0.1
4,592,323	-				-0.5
4,592,324	-				+1.0
4,592,324	-				-0.0
4,592,324	-				-0.1
4,592,324	-				-0.1
4,592,324	-				-0.5
4,592,324	-				+0.7
4,592,327	+				+0.5
4,592,327	+				+0.5
4,592,327	+				-0.3
4,592,327	+				+0.4
4,592,327	+				-0.1
4,592,327	+				-1.1
4,592,327	+				-0.4
4,592,327	+				-0.7
4,592,335	-				-0.2
4,592,335	-				+0.5
4,592,335	-				+1.9
4,592,335	-				-0.3
4,592,335	-				+0.3
4,592,335	-				+0.2
4,592,335	-				-0.5
4,592,335	-				-0.6
4,592,335	-				+1.1
4,592,335	-				-0.1
4,592,335	-				-1.3
4,592,335	-				-0.1
4,592,335	-				+0.1
4,592,335	-				+0.3
4,592,335	-				+0.2
4,592,335	-				-0.6
4,592,335	-				+0.3
4,592,335	-				-0.8
4,592,335	-				-0.6
4,592,335	-				-2.3
4,592,335	-				-0.2
4,592,335	-				+0.7
4,592,335	-				+0.3
4,592,335	-				+0.2
4,592,335	-				-0.1
4,592,335	-				+0.9
4,592,337	+				-0.1
4,592,345	-				+0.0
4,592,368	+				+0.4
4,592,381	+		BWI76_RS21980	0.18	+0.4
4,592,381	+		BWI76_RS21980	0.18	+0.3
4,592,382	-		BWI76_RS21980	0.19	-0.4
4,592,389	-		BWI76_RS21980	0.22	-0.0
4,592,389	-		BWI76_RS21980	0.22	+1.3
4,592,389	-		BWI76_RS21980	0.22	+1.0
4,592,389	-		BWI76_RS21980	0.22	+2.6
4,592,389	-		BWI76_RS21980	0.22	-0.5
4,592,631	+				-2.5
4,592,639	-				+1.1
4,592,641	+				+0.2
4,592,641	+				-0.3
4,592,641	+				+0.5
4,592,649	-				-0.1
4,592,694	-				-0.7
4,592,724	+				-0.2
4,592,750	+				-0.4
4,592,815	+				-0.1
4,592,890	+				-1.5
4,592,936	+				-1.2
4,592,941	+				-1.2
4,592,941	+				-2.6
4,592,941	+				-1.9
4,592,941	+				-1.2
4,592,944	-				-2.4
4,592,944	-				-0.7
4,592,944	-				-0.9
4,592,944	-				-2.0
4,592,944	-				-1.6
4,592,944	-				-1.9
4,592,949	-				-0.9
4,592,949	-				-0.3
4,592,955	+				-1.5
4,592,970	-				-2.0
4,593,040	-				-2.6
4,593,042	+				-3.6
4,593,079	-				-2.2
4,593,079	-				-1.6
4,593,116	-		BWI76_RS21985	0.12	-0.7
4,593,170	+		BWI76_RS21985	0.15	-1.9
4,593,191	+		BWI76_RS21985	0.17	-2.1
4,593,199	-		BWI76_RS21985	0.17	-2.1
4,593,199	-		BWI76_RS21985	0.17	-0.3
4,593,204	-		BWI76_RS21985	0.17	-2.4
4,593,314	+		BWI76_RS21985	0.25	-1.2
4,593,356	+		BWI76_RS21985	0.27	-1.7
4,593,422	+		BWI76_RS21985	0.32	-2.2
4,593,437	-		BWI76_RS21985	0.33	-1.2
4,593,662	+		BWI76_RS21985	0.48	-1.9
4,593,673	-		BWI76_RS21985	0.48	-0.2
4,593,680	-		BWI76_RS21985	0.49	-2.1
4,593,680	-		BWI76_RS21985	0.49	-1.8
4,593,709	+		BWI76_RS21985	0.51	-0.8
4,593,709	+		BWI76_RS21985	0.51	-3.1
4,593,717	-		BWI76_RS21985	0.51	-1.9
4,593,717	-		BWI76_RS21985	0.51	-2.0
4,593,805	+		BWI76_RS21985	0.57	-2.3
4,593,864	+		BWI76_RS21985	0.61	-2.4
4,593,872	-		BWI76_RS21985	0.61	-0.7
4,594,120	-		BWI76_RS21985	0.78	-1.8
4,594,405	+				-1.8
4,594,411	+				-1.0
4,594,443	+				-1.6
4,594,456	-				-2.2
4,594,505	+				-1.6
4,594,712	-				-2.5
4,595,245	+		BWI76_RS21990	0.30	-2.7
4,595,253	-		BWI76_RS21990	0.30	-1.7
4,595,288	-		BWI76_RS21990	0.32	-1.6
4,595,430	+		BWI76_RS21990	0.40	-2.3