Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21215 and BWI76_RS21220 are separated by 73 nucleotides BWI76_RS21220 and BWI76_RS21225 are separated by 55 nucleotides BWI76_RS21225 and BWI76_RS21230 overlap by 14 nucleotides BWI76_RS21230 and BWI76_RS21235 overlap by 15 nucleotides BWI76_RS21235 and BWI76_RS21240 overlap by 56 nucleotides
BWI76_RS21215: BWI76_RS21215 - NAGC-like transcriptional regulator, at 4,443,874 to 4,445,070
_RS21215
BWI76_RS21220: BWI76_RS21220 - membrane protein, at 4,445,144 to 4,445,566
_RS21220
BWI76_RS21225: BWI76_RS21225 - serine hydroxymethyltransferase, at 4,445,622 to 4,446,875
_RS21225
BWI76_RS21230: BWI76_RS21230 - hypothetical protein, at 4,446,862 to 4,447,091
_RS21230
BWI76_RS21235: BWI76_RS21235 - hypothetical protein, at 4,447,077 to 4,447,256
_RS21235
BWI76_RS21240: BWI76_RS21240 - flavohemoprotein, at 4,447,201 to 4,448,391
_RS21240
Position (kb) 4445
4446
4447 Strain fitness (log2 ratio) -1
0
1 at 4444.755 kb on + strand, within BWI76_RS21215 at 4444.887 kb on - strand, within BWI76_RS21215 at 4444.934 kb on + strand, within BWI76_RS21215 at 4445.027 kb on - strand at 4445.165 kb on + strand at 4445.168 kb on - strand at 4445.270 kb on + strand, within BWI76_RS21220 at 4445.283 kb on - strand, within BWI76_RS21220 at 4445.423 kb on + strand, within BWI76_RS21220 at 4445.519 kb on - strand, within BWI76_RS21220 at 4445.573 kb on - strand at 4446.973 kb on - strand, within BWI76_RS21230 at 4447.198 kb on + strand, within BWI76_RS21235 at 4447.259 kb on - strand at 4447.357 kb on - strand, within BWI76_RS21240 at 4447.482 kb on + strand, within BWI76_RS21240 at 4447.482 kb on + strand, within BWI76_RS21240 at 4447.584 kb on - strand, within BWI76_RS21240 at 4447.854 kb on - strand, within BWI76_RS21240
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 4,444,755 + BWI76_RS21215 0.74 -0.1 4,444,887 - BWI76_RS21215 0.85 +0.1 4,444,934 + BWI76_RS21215 0.89 +0.1 4,445,027 - -0.3 4,445,165 + +0.1 4,445,168 - -0.2 4,445,270 + BWI76_RS21220 0.30 -0.1 4,445,283 - BWI76_RS21220 0.33 +0.2 4,445,423 + BWI76_RS21220 0.66 +0.2 4,445,519 - BWI76_RS21220 0.89 +0.2 4,445,573 - -0.1 4,446,973 - BWI76_RS21230 0.48 -0.7 4,447,198 + BWI76_RS21235 0.67 -0.4 4,447,259 - +1.5 4,447,357 - BWI76_RS21240 0.13 -0.1 4,447,482 + BWI76_RS21240 0.24 -0.0 4,447,482 + BWI76_RS21240 0.24 +0.3 4,447,584 - BWI76_RS21240 0.32 -0.4 4,447,854 - BWI76_RS21240 0.55 +0.3
Or see this region's nucleotide sequence