Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15240

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15235 and BWI76_RS15240 are separated by 176 nucleotidesBWI76_RS15240 and BWI76_RS15245 are separated by 18 nucleotides BWI76_RS15235: BWI76_RS15235 - hypothetical protein, at 3,192,793 to 3,194,031 _RS15235 BWI76_RS15240: BWI76_RS15240 - alcohol dehydrogenase, at 3,194,208 to 3,195,353 _RS15240 BWI76_RS15245: BWI76_RS15245 - dihydrodipicolinate synthase family protein, at 3,195,372 to 3,196,256 _RS15245 Position (kb) 3194 3195 3196Strain fitness (log2 ratio) -1 0 1 2 3at 3193.545 kb on + strand, within BWI76_RS15235at 3193.586 kb on + strand, within BWI76_RS15235at 3193.808 kb on - strand, within BWI76_RS15235at 3194.018 kb on - strandat 3194.366 kb on - strand, within BWI76_RS15240at 3194.389 kb on - strand, within BWI76_RS15240at 3194.419 kb on - strand, within BWI76_RS15240at 3194.522 kb on - strand, within BWI76_RS15240at 3194.658 kb on - strand, within BWI76_RS15240at 3195.052 kb on + strand, within BWI76_RS15240at 3195.225 kb on + strand, within BWI76_RS15240at 3195.356 kb on - strandat 3195.623 kb on - strand, within BWI76_RS15245at 3195.702 kb on - strand, within BWI76_RS15245at 3195.736 kb on - strand, within BWI76_RS15245at 3195.892 kb on - strand, within BWI76_RS15245at 3195.930 kb on - strand, within BWI76_RS15245at 3195.962 kb on + strand, within BWI76_RS15245at 3196.052 kb on + strand, within BWI76_RS15245at 3196.074 kb on - strand, within BWI76_RS15245at 3196.077 kb on + strand, within BWI76_RS15245at 3196.077 kb on + strand, within BWI76_RS15245at 3196.077 kb on + strand, within BWI76_RS15245at 3196.077 kb on + strand, within BWI76_RS15245at 3196.077 kb on + strand, within BWI76_RS15245at 3196.085 kb on - strand, within BWI76_RS15245at 3196.088 kb on - strand, within BWI76_RS15245at 3196.098 kb on - strand, within BWI76_RS15245at 3196.173 kb on - strandat 3196.173 kb on - strandat 3196.186 kb on + strandat 3196.191 kb on + strandat 3196.194 kb on - strandat 3196.197 kb on + strandat 3196.198 kb on + strandat 3196.199 kb on - strandat 3196.204 kb on + strandat 3196.205 kb on - strandat 3196.205 kb on - strandat 3196.205 kb on - strandat 3196.212 kb on - strandat 3196.212 kb on - strandat 3196.212 kb on - strandat 3196.351 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
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3,193,545 + BWI76_RS15235 0.61 +0.1
3,193,586 + BWI76_RS15235 0.64 +0.8
3,193,808 - BWI76_RS15235 0.82 -1.6
3,194,018 - -0.0
3,194,366 - BWI76_RS15240 0.14 -0.6
3,194,389 - BWI76_RS15240 0.16 +0.1
3,194,419 - BWI76_RS15240 0.18 +0.2
3,194,522 - BWI76_RS15240 0.27 -0.8
3,194,658 - BWI76_RS15240 0.39 +0.7
3,195,052 + BWI76_RS15240 0.74 +0.3
3,195,225 + BWI76_RS15240 0.89 +0.9
3,195,356 - -0.5
3,195,623 - BWI76_RS15245 0.28 +0.8
3,195,702 - BWI76_RS15245 0.37 -0.5
3,195,736 - BWI76_RS15245 0.41 -0.0
3,195,892 - BWI76_RS15245 0.59 -0.4
3,195,930 - BWI76_RS15245 0.63 +0.2
3,195,962 + BWI76_RS15245 0.67 +1.3
3,196,052 + BWI76_RS15245 0.77 +0.7
3,196,074 - BWI76_RS15245 0.79 -0.3
3,196,077 + BWI76_RS15245 0.80 +0.2
3,196,077 + BWI76_RS15245 0.80 -0.4
3,196,077 + BWI76_RS15245 0.80 -0.2
3,196,077 + BWI76_RS15245 0.80 +0.5
3,196,077 + BWI76_RS15245 0.80 -0.3
3,196,085 - BWI76_RS15245 0.81 +3.0
3,196,088 - BWI76_RS15245 0.81 -0.2
3,196,098 - BWI76_RS15245 0.82 +0.2
3,196,173 - -0.9
3,196,173 - -0.3
3,196,186 + -0.3
3,196,191 + +0.2
3,196,194 - +0.4
3,196,197 + -0.0
3,196,198 + -0.2
3,196,199 - +0.2
3,196,204 + +0.5
3,196,205 - +0.1
3,196,205 - -0.0
3,196,205 - +0.9
3,196,212 - -0.3
3,196,212 - +0.9
3,196,212 - -1.2
3,196,351 + +1.5

Or see this region's nucleotide sequence