Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14780 and BWI76_RS14785 are separated by 435 nucleotides BWI76_RS14785 and BWI76_RS14790 are separated by 36 nucleotides BWI76_RS14790 and BWI76_RS14795 are separated by 146 nucleotides BWI76_RS14795 and BWI76_RS14800 are separated by 45 nucleotides
BWI76_RS14780: BWI76_RS14780 - phosphotriesterase, at 3,099,517 to 3,100,488
_RS14780
BWI76_RS14785: BWI76_RS14785 - hypothetical protein, at 3,100,924 to 3,101,172
_RS14785
BWI76_RS14790: BWI76_RS14790 - 2-dehydropantoate 2-reductase, at 3,101,209 to 3,102,102
_RS14790
BWI76_RS14795: BWI76_RS14795 - hypothetical protein, at 3,102,249 to 3,102,473
_RS14795
BWI76_RS14800: BWI76_RS14800 - non-heme chloroperoxidase, at 3,102,519 to 3,103,355
_RS14800
Position (kb)
3101
3102
3103 Strain fitness (log2 ratio)
-1
0
1 at 3100.627 kb on + strand at 3101.321 kb on - strand at 3101.463 kb on + strand, within BWI76_RS14790 at 3101.607 kb on + strand, within BWI76_RS14790 at 3102.083 kb on - strand at 3102.467 kb on + strand at 3102.467 kb on + strand at 3102.832 kb on - strand, within BWI76_RS14800 at 3102.995 kb on - strand, within BWI76_RS14800 at 3103.092 kb on - strand, within BWI76_RS14800
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 3,100,627 + -0.1 3,101,321 - +0.6 3,101,463 + BWI76_RS14790 0.28 +0.7 3,101,607 + BWI76_RS14790 0.45 +0.3 3,102,083 - +0.1 3,102,467 + -0.6 3,102,467 + +0.8 3,102,832 - BWI76_RS14800 0.37 -0.3 3,102,995 - BWI76_RS14800 0.57 -0.9 3,103,092 - BWI76_RS14800 0.68 -0.2
Or see this region's nucleotide sequence