Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12395

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12385 and BWI76_RS12390 are separated by 135 nucleotidesBWI76_RS12390 and BWI76_RS12395 are separated by 349 nucleotidesBWI76_RS12395 and BWI76_RS12400 are separated by 59 nucleotides BWI76_RS12385: BWI76_RS12385 - DNA polymerase V subunit UmuC, at 2,586,868 to 2,588,133 _RS12385 BWI76_RS12390: BWI76_RS12390 - antibiotic biosynthesis monooxygenase, at 2,588,269 to 2,588,568 _RS12390 BWI76_RS12395: BWI76_RS12395 - zinc-binding alcohol dehydrogenase, at 2,588,918 to 2,589,901 _RS12395 BWI76_RS12400: BWI76_RS12400 - TetR family transcriptional regulator, at 2,589,961 to 2,590,617 _RS12400 Position (kb) 2588 2589 2590Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2587.963 kb on + strand, within BWI76_RS12385at 2588.096 kb on + strandat 2588.104 kb on - strandat 2588.116 kb on - strandat 2588.230 kb on - strandat 2588.365 kb on + strandat 2588.435 kb on + strand, within BWI76_RS12390at 2588.494 kb on + strand, within BWI76_RS12390at 2588.624 kb on - strandat 2588.624 kb on - strandat 2588.649 kb on - strandat 2588.675 kb on - strandat 2588.710 kb on + strandat 2588.951 kb on + strandat 2588.994 kb on - strandat 2589.188 kb on - strand, within BWI76_RS12395at 2589.353 kb on + strand, within BWI76_RS12395at 2589.381 kb on - strand, within BWI76_RS12395at 2589.495 kb on + strand, within BWI76_RS12395at 2589.581 kb on + strand, within BWI76_RS12395at 2589.605 kb on + strand, within BWI76_RS12395at 2589.660 kb on + strand, within BWI76_RS12395at 2589.660 kb on + strand, within BWI76_RS12395at 2589.660 kb on + strand, within BWI76_RS12395at 2589.661 kb on - strand, within BWI76_RS12395at 2589.668 kb on - strand, within BWI76_RS12395at 2589.678 kb on - strand, within BWI76_RS12395at 2589.687 kb on + strand, within BWI76_RS12395at 2589.702 kb on + strand, within BWI76_RS12395at 2589.708 kb on + strand, within BWI76_RS12395at 2589.718 kb on + strand, within BWI76_RS12395at 2589.750 kb on + strand, within BWI76_RS12395at 2589.781 kb on - strand, within BWI76_RS12395at 2589.789 kb on + strand, within BWI76_RS12395at 2589.790 kb on + strand, within BWI76_RS12395at 2589.797 kb on - strand, within BWI76_RS12395at 2589.805 kb on + strandat 2589.807 kb on - strandat 2589.810 kb on + strandat 2589.813 kb on + strandat 2589.813 kb on - strandat 2589.815 kb on + strandat 2589.815 kb on - strandat 2589.822 kb on - strandat 2589.834 kb on + strandat 2589.854 kb on + strandat 2589.910 kb on + strandat 2589.910 kb on + strandat 2589.922 kb on + strandat 2589.956 kb on + strandat 2589.956 kb on + strandat 2589.964 kb on + strandat 2589.966 kb on + strandat 2589.972 kb on - strandat 2589.972 kb on - strandat 2589.972 kb on - strandat 2589.974 kb on - strandat 2589.979 kb on - strandat 2589.989 kb on + strandat 2590.005 kb on - strandat 2590.039 kb on - strand, within BWI76_RS12400at 2590.039 kb on - strand, within BWI76_RS12400at 2590.044 kb on - strand, within BWI76_RS12400at 2590.085 kb on - strand, within BWI76_RS12400at 2590.086 kb on - strand, within BWI76_RS12400at 2590.201 kb on - strand, within BWI76_RS12400at 2590.238 kb on - strand, within BWI76_RS12400at 2590.340 kb on - strand, within BWI76_RS12400at 2590.353 kb on - strand, within BWI76_RS12400at 2590.362 kb on - strandat 2590.407 kb on - strand, within BWI76_RS12400at 2590.524 kb on + strand, within BWI76_RS12400at 2590.532 kb on - strand, within BWI76_RS12400at 2590.532 kb on - strand, within BWI76_RS12400at 2590.532 kb on - strand, within BWI76_RS12400at 2590.532 kb on - strand, within BWI76_RS12400at 2590.532 kb on - strand, within BWI76_RS12400at 2590.613 kb on + strandat 2590.621 kb on - strandat 2590.621 kb on - strandat 2590.679 kb on - strandat 2590.743 kb on + strandat 2590.751 kb on - strandat 2590.751 kb on - strandat 2590.751 kb on - strandat 2590.751 kb on - strandat 2590.757 kb on + strandat 2590.765 kb on - strandat 2590.775 kb on - strandat 2590.775 kb on - strandat 2590.775 kb on - strandat 2590.775 kb on - strandat 2590.779 kb on - strandat 2590.781 kb on - strandat 2590.791 kb on - strandat 2590.801 kb on + strandat 2590.814 kb on + strandat 2590.822 kb on - strandat 2590.822 kb on - strandat 2590.822 kb on - strandat 2590.822 kb on - strandat 2590.822 kb on - strandat 2590.824 kb on + strandat 2590.835 kb on + strandat 2590.859 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
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2,587,963 + BWI76_RS12385 0.86 +0.3
2,588,096 + +0.7
2,588,104 - +1.9
2,588,116 - -0.3
2,588,230 - -0.9
2,588,365 + -1.5
2,588,435 + BWI76_RS12390 0.55 -0.1
2,588,494 + BWI76_RS12390 0.75 -0.1
2,588,624 - +0.3
2,588,624 - -1.7
2,588,649 - -0.1
2,588,675 - -0.7
2,588,710 + -2.1
2,588,951 + -0.7
2,588,994 - -0.3
2,589,188 - BWI76_RS12395 0.27 -1.1
2,589,353 + BWI76_RS12395 0.44 -0.5
2,589,381 - BWI76_RS12395 0.47 -0.5
2,589,495 + BWI76_RS12395 0.59 -0.0
2,589,581 + BWI76_RS12395 0.67 -0.4
2,589,605 + BWI76_RS12395 0.70 -1.0
2,589,660 + BWI76_RS12395 0.75 -0.5
2,589,660 + BWI76_RS12395 0.75 +0.3
2,589,660 + BWI76_RS12395 0.75 +0.7
2,589,661 - BWI76_RS12395 0.76 +0.5
2,589,668 - BWI76_RS12395 0.76 -0.4
2,589,678 - BWI76_RS12395 0.77 +0.6
2,589,687 + BWI76_RS12395 0.78 +0.1
2,589,702 + BWI76_RS12395 0.80 -1.3
2,589,708 + BWI76_RS12395 0.80 +0.3
2,589,718 + BWI76_RS12395 0.81 -0.6
2,589,750 + BWI76_RS12395 0.85 -0.3
2,589,781 - BWI76_RS12395 0.88 -0.9
2,589,789 + BWI76_RS12395 0.89 -0.0
2,589,790 + BWI76_RS12395 0.89 +0.4
2,589,797 - BWI76_RS12395 0.89 -3.0
2,589,805 + -0.1
2,589,807 - +0.9
2,589,810 + -0.3
2,589,813 + -0.5
2,589,813 - -0.7
2,589,815 + -0.8
2,589,815 - -1.5
2,589,822 - -0.1
2,589,834 + +1.5
2,589,854 + -0.4
2,589,910 + +0.0
2,589,910 + -0.8
2,589,922 + -0.4
2,589,956 + -0.4
2,589,956 + +0.3
2,589,964 + +0.5
2,589,966 + -1.1
2,589,972 - -0.0
2,589,972 - -0.3
2,589,972 - -1.2
2,589,974 - +0.2
2,589,979 - +0.3
2,589,989 + -1.7
2,590,005 - +0.7
2,590,039 - BWI76_RS12400 0.12 -0.7
2,590,039 - BWI76_RS12400 0.12 -0.2
2,590,044 - BWI76_RS12400 0.13 +0.2
2,590,085 - BWI76_RS12400 0.19 -0.3
2,590,086 - BWI76_RS12400 0.19 +0.6
2,590,201 - BWI76_RS12400 0.37 +1.1
2,590,238 - BWI76_RS12400 0.42 +1.0
2,590,340 - BWI76_RS12400 0.58 +0.4
2,590,353 - BWI76_RS12400 0.60 +0.0
2,590,362 - +0.5
2,590,407 - BWI76_RS12400 0.68 -1.2
2,590,524 + BWI76_RS12400 0.86 +0.4
2,590,532 - BWI76_RS12400 0.87 -0.1
2,590,532 - BWI76_RS12400 0.87 -0.2
2,590,532 - BWI76_RS12400 0.87 +0.4
2,590,532 - BWI76_RS12400 0.87 +0.8
2,590,532 - BWI76_RS12400 0.87 +0.7
2,590,613 + +0.9
2,590,621 - +0.1
2,590,621 - -0.5
2,590,679 - -0.5
2,590,743 + -1.0
2,590,751 - +0.2
2,590,751 - -0.4
2,590,751 - -0.4
2,590,751 - -1.7
2,590,757 + -0.1
2,590,765 - -2.8
2,590,775 - +0.4
2,590,775 - +0.2
2,590,775 - +0.3
2,590,775 - -0.2
2,590,779 - -0.5
2,590,781 - -0.4
2,590,791 - -1.3
2,590,801 + +1.3
2,590,814 + -0.5
2,590,822 - -0.2
2,590,822 - -4.6
2,590,822 - -0.8
2,590,822 - -0.3
2,590,822 - -0.3
2,590,824 + +1.2
2,590,835 + -0.0
2,590,859 + +0.3

Or see this region's nucleotide sequence