Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09065 and BWI76_RS09070 are separated by 209 nucleotides BWI76_RS09070 and BWI76_RS09075 are separated by 4 nucleotides
BWI76_RS09065: BWI76_RS09065 - sugar phosphatase SupH, at 1,912,581 to 1,913,396
_RS09065
BWI76_RS09070: BWI76_RS09070 - formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme, at 1,913,606 to 1,916,038
_RS09070
BWI76_RS09075: BWI76_RS09075 - pyruvate formate lyase-activating protein, at 1,916,043 to 1,916,942
_RS09075
Position (kb) 1913
1914
1915
1916
1917 Strain fitness (log2 ratio) -1
0
1
2 at 1912.791 kb on - strand, within BWI76_RS09065 at 1912.817 kb on - strand, within BWI76_RS09065 at 1912.827 kb on - strand, within BWI76_RS09065 at 1913.000 kb on + strand, within BWI76_RS09065 at 1913.593 kb on - strand at 1913.657 kb on - strand at 1913.713 kb on + strand at 1914.238 kb on - strand, within BWI76_RS09070 at 1914.290 kb on - strand, within BWI76_RS09070 at 1914.308 kb on - strand, within BWI76_RS09070 at 1914.388 kb on + strand, within BWI76_RS09070 at 1914.388 kb on + strand, within BWI76_RS09070 at 1914.396 kb on - strand, within BWI76_RS09070 at 1914.396 kb on - strand, within BWI76_RS09070 at 1914.528 kb on - strand, within BWI76_RS09070 at 1914.659 kb on + strand, within BWI76_RS09070 at 1914.868 kb on - strand, within BWI76_RS09070 at 1914.890 kb on + strand, within BWI76_RS09070 at 1915.140 kb on - strand, within BWI76_RS09070 at 1915.163 kb on - strand, within BWI76_RS09070 at 1915.382 kb on - strand, within BWI76_RS09070 at 1915.419 kb on + strand, within BWI76_RS09070 at 1915.666 kb on + strand, within BWI76_RS09070 at 1915.929 kb on + strand at 1915.945 kb on + strand at 1915.950 kb on + strand at 1915.950 kb on + strand at 1915.958 kb on - strand at 1916.068 kb on + strand at 1916.103 kb on - strand at 1916.122 kb on + strand at 1916.137 kb on + strand, within BWI76_RS09075 at 1916.137 kb on + strand, within BWI76_RS09075 at 1916.137 kb on + strand, within BWI76_RS09075 at 1916.137 kb on + strand, within BWI76_RS09075 at 1916.137 kb on + strand, within BWI76_RS09075 at 1916.137 kb on + strand, within BWI76_RS09075 at 1916.145 kb on - strand, within BWI76_RS09075 at 1916.145 kb on - strand, within BWI76_RS09075 at 1916.145 kb on - strand, within BWI76_RS09075 at 1916.209 kb on + strand, within BWI76_RS09075 at 1916.218 kb on - strand, within BWI76_RS09075 at 1916.337 kb on - strand, within BWI76_RS09075 at 1916.713 kb on - strand, within BWI76_RS09075
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 1,912,791 - BWI76_RS09065 0.26 -0.1 1,912,817 - BWI76_RS09065 0.29 +0.3 1,912,827 - BWI76_RS09065 0.30 -0.1 1,913,000 + BWI76_RS09065 0.51 -0.8 1,913,593 - -0.4 1,913,657 - -0.1 1,913,713 + -0.5 1,914,238 - BWI76_RS09070 0.26 +0.0 1,914,290 - BWI76_RS09070 0.28 +0.4 1,914,308 - BWI76_RS09070 0.29 -0.7 1,914,388 + BWI76_RS09070 0.32 +0.3 1,914,388 + BWI76_RS09070 0.32 +0.4 1,914,396 - BWI76_RS09070 0.32 +0.1 1,914,396 - BWI76_RS09070 0.32 +2.1 1,914,528 - BWI76_RS09070 0.38 +0.2 1,914,659 + BWI76_RS09070 0.43 -0.6 1,914,868 - BWI76_RS09070 0.52 -1.1 1,914,890 + BWI76_RS09070 0.53 +0.1 1,915,140 - BWI76_RS09070 0.63 +0.2 1,915,163 - BWI76_RS09070 0.64 +0.3 1,915,382 - BWI76_RS09070 0.73 +0.5 1,915,419 + BWI76_RS09070 0.75 +0.3 1,915,666 + BWI76_RS09070 0.85 +0.4 1,915,929 + -0.6 1,915,945 + -0.1 1,915,950 + -0.2 1,915,950 + +0.7 1,915,958 - -0.0 1,916,068 + +0.2 1,916,103 - -0.2 1,916,122 + -0.4 1,916,137 + BWI76_RS09075 0.10 -0.4 1,916,137 + BWI76_RS09075 0.10 +0.1 1,916,137 + BWI76_RS09075 0.10 -0.0 1,916,137 + BWI76_RS09075 0.10 +0.0 1,916,137 + BWI76_RS09075 0.10 -0.8 1,916,137 + BWI76_RS09075 0.10 +0.2 1,916,145 - BWI76_RS09075 0.11 -0.2 1,916,145 - BWI76_RS09075 0.11 +0.0 1,916,145 - BWI76_RS09075 0.11 +0.1 1,916,209 + BWI76_RS09075 0.18 +0.1 1,916,218 - BWI76_RS09075 0.19 +0.1 1,916,337 - BWI76_RS09075 0.33 -0.1 1,916,713 - BWI76_RS09075 0.74 +0.7
Or see this region's nucleotide sequence