Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09070

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09065 and BWI76_RS09070 are separated by 209 nucleotidesBWI76_RS09070 and BWI76_RS09075 are separated by 4 nucleotides BWI76_RS09065: BWI76_RS09065 - sugar phosphatase SupH, at 1,912,581 to 1,913,396 _RS09065 BWI76_RS09070: BWI76_RS09070 - formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme, at 1,913,606 to 1,916,038 _RS09070 BWI76_RS09075: BWI76_RS09075 - pyruvate formate lyase-activating protein, at 1,916,043 to 1,916,942 _RS09075 Position (kb) 1913 1914 1915 1916 1917Strain fitness (log2 ratio) -1 0 1 2at 1912.791 kb on - strand, within BWI76_RS09065at 1912.817 kb on - strand, within BWI76_RS09065at 1912.827 kb on - strand, within BWI76_RS09065at 1913.000 kb on + strand, within BWI76_RS09065at 1913.593 kb on - strandat 1913.657 kb on - strandat 1913.713 kb on + strandat 1914.238 kb on - strand, within BWI76_RS09070at 1914.290 kb on - strand, within BWI76_RS09070at 1914.308 kb on - strand, within BWI76_RS09070at 1914.388 kb on + strand, within BWI76_RS09070at 1914.388 kb on + strand, within BWI76_RS09070at 1914.396 kb on - strand, within BWI76_RS09070at 1914.396 kb on - strand, within BWI76_RS09070at 1914.528 kb on - strand, within BWI76_RS09070at 1914.659 kb on + strand, within BWI76_RS09070at 1914.868 kb on - strand, within BWI76_RS09070at 1914.890 kb on + strand, within BWI76_RS09070at 1915.140 kb on - strand, within BWI76_RS09070at 1915.163 kb on - strand, within BWI76_RS09070at 1915.382 kb on - strand, within BWI76_RS09070at 1915.419 kb on + strand, within BWI76_RS09070at 1915.666 kb on + strand, within BWI76_RS09070at 1915.929 kb on + strandat 1915.945 kb on + strandat 1915.950 kb on + strandat 1915.950 kb on + strandat 1915.958 kb on - strandat 1916.068 kb on + strandat 1916.103 kb on - strandat 1916.122 kb on + strandat 1916.137 kb on + strand, within BWI76_RS09075at 1916.137 kb on + strand, within BWI76_RS09075at 1916.137 kb on + strand, within BWI76_RS09075at 1916.137 kb on + strand, within BWI76_RS09075at 1916.137 kb on + strand, within BWI76_RS09075at 1916.137 kb on + strand, within BWI76_RS09075at 1916.145 kb on - strand, within BWI76_RS09075at 1916.145 kb on - strand, within BWI76_RS09075at 1916.145 kb on - strand, within BWI76_RS09075at 1916.209 kb on + strand, within BWI76_RS09075at 1916.218 kb on - strand, within BWI76_RS09075at 1916.337 kb on - strand, within BWI76_RS09075at 1916.713 kb on - strand, within BWI76_RS09075

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
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1,912,791 - BWI76_RS09065 0.26 -0.1
1,912,817 - BWI76_RS09065 0.29 +0.3
1,912,827 - BWI76_RS09065 0.30 -0.1
1,913,000 + BWI76_RS09065 0.51 -0.8
1,913,593 - -0.4
1,913,657 - -0.1
1,913,713 + -0.5
1,914,238 - BWI76_RS09070 0.26 +0.0
1,914,290 - BWI76_RS09070 0.28 +0.4
1,914,308 - BWI76_RS09070 0.29 -0.7
1,914,388 + BWI76_RS09070 0.32 +0.3
1,914,388 + BWI76_RS09070 0.32 +0.4
1,914,396 - BWI76_RS09070 0.32 +0.1
1,914,396 - BWI76_RS09070 0.32 +2.1
1,914,528 - BWI76_RS09070 0.38 +0.2
1,914,659 + BWI76_RS09070 0.43 -0.6
1,914,868 - BWI76_RS09070 0.52 -1.1
1,914,890 + BWI76_RS09070 0.53 +0.1
1,915,140 - BWI76_RS09070 0.63 +0.2
1,915,163 - BWI76_RS09070 0.64 +0.3
1,915,382 - BWI76_RS09070 0.73 +0.5
1,915,419 + BWI76_RS09070 0.75 +0.3
1,915,666 + BWI76_RS09070 0.85 +0.4
1,915,929 + -0.6
1,915,945 + -0.1
1,915,950 + -0.2
1,915,950 + +0.7
1,915,958 - -0.0
1,916,068 + +0.2
1,916,103 - -0.2
1,916,122 + -0.4
1,916,137 + BWI76_RS09075 0.10 -0.4
1,916,137 + BWI76_RS09075 0.10 +0.1
1,916,137 + BWI76_RS09075 0.10 -0.0
1,916,137 + BWI76_RS09075 0.10 +0.0
1,916,137 + BWI76_RS09075 0.10 -0.8
1,916,137 + BWI76_RS09075 0.10 +0.2
1,916,145 - BWI76_RS09075 0.11 -0.2
1,916,145 - BWI76_RS09075 0.11 +0.0
1,916,145 - BWI76_RS09075 0.11 +0.1
1,916,209 + BWI76_RS09075 0.18 +0.1
1,916,218 - BWI76_RS09075 0.19 +0.1
1,916,337 - BWI76_RS09075 0.33 -0.1
1,916,713 - BWI76_RS09075 0.74 +0.7

Or see this region's nucleotide sequence