Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04190 and BWI76_RS04195 overlap by 20 nucleotides BWI76_RS04195 and BWI76_RS04200 are separated by 114 nucleotides BWI76_RS04200 and BWI76_RS04205 overlap by 4 nucleotides
BWI76_RS04190: BWI76_RS04190 - Trp operon repressor, at 863,384 to 863,716
_RS04190
BWI76_RS04195: BWI76_RS04195 - non-canonical purine NTP phosphatase, at 863,697 to 864,218
_RS04195
BWI76_RS04200: BWI76_RS04200 - phosphoglycerate mutase GpmB, at 864,333 to 864,980
_RS04200
BWI76_RS04205: BWI76_RS04205 - right oriC-binding transcriptional activator, at 864,977 to 865,846
_RS04205
Position (kb)
864
865 Strain fitness (log2 ratio)
-2
-1
0
1 at 864.304 kb on + strand at 864.305 kb on - strand at 864.313 kb on - strand at 864.581 kb on + strand, within BWI76_RS04200 at 864.589 kb on - strand, within BWI76_RS04200 at 864.892 kb on + strand, within BWI76_RS04200 at 865.206 kb on + strand, within BWI76_RS04205 at 865.409 kb on + strand, within BWI76_RS04205 at 865.410 kb on + strand, within BWI76_RS04205 at 865.416 kb on - strand, within BWI76_RS04205 at 865.420 kb on + strand, within BWI76_RS04205 at 865.435 kb on + strand, within BWI76_RS04205 at 865.538 kb on + strand, within BWI76_RS04205 at 865.551 kb on - strand, within BWI76_RS04205 at 865.653 kb on - strand, within BWI76_RS04205 at 865.759 kb on - strand, within BWI76_RS04205 at 865.767 kb on + strand at 865.800 kb on + strand at 865.809 kb on + strand at 865.811 kb on + strand at 865.811 kb on + strand at 865.811 kb on + strand at 865.811 kb on + strand at 865.811 kb on + strand at 865.811 kb on + strand at 865.811 kb on + strand at 865.819 kb on - strand at 865.819 kb on - strand at 865.819 kb on - strand at 865.819 kb on - strand at 865.819 kb on - strand at 865.859 kb on + strand at 865.859 kb on + strand at 865.859 kb on + strand at 865.866 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 864,304 + +0.6 864,305 - -0.7 864,313 - -2.0 864,581 + BWI76_RS04200 0.38 +0.2 864,589 - BWI76_RS04200 0.40 -1.1 864,892 + BWI76_RS04200 0.86 -0.3 865,206 + BWI76_RS04205 0.26 -0.0 865,409 + BWI76_RS04205 0.50 -0.6 865,410 + BWI76_RS04205 0.50 -0.4 865,416 - BWI76_RS04205 0.50 +0.2 865,420 + BWI76_RS04205 0.51 -0.2 865,435 + BWI76_RS04205 0.53 -0.6 865,538 + BWI76_RS04205 0.64 +0.2 865,551 - BWI76_RS04205 0.66 -1.9 865,653 - BWI76_RS04205 0.78 -0.4 865,759 - BWI76_RS04205 0.90 +0.0 865,767 + -0.4 865,800 + -0.0 865,809 + -0.4 865,811 + +0.2 865,811 + -1.5 865,811 + -0.9 865,811 + -1.6 865,811 + +0.4 865,811 + -0.4 865,811 + -0.3 865,819 - -0.2 865,819 - +0.1 865,819 - +0.5 865,819 - +0.3 865,819 - +0.7 865,859 + -0.6 865,859 + +0.2 865,859 + -0.5 865,866 + +0.3
Or see this region's nucleotide sequence