Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03830 and BWI76_RS03835 are separated by 378 nucleotides BWI76_RS03835 and BWI76_RS03840 are separated by 9 nucleotides
BWI76_RS03830: BWI76_RS03830 - 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component, at 791,891 to 793,453
_RS03830
BWI76_RS03835: BWI76_RS03835 - 4-hydroxyphenylacetate catabolism regulatory protein HpaA, at 793,832 to 794,722
_RS03835
BWI76_RS03840: BWI76_RS03840 - 4-hydroxyphenylacetate permease, at 794,732 to 796,108
_RS03840
Position (kb) 793
794
795 Strain fitness (log2 ratio) -1
0
1
2 at 792.851 kb on + strand, within BWI76_RS03830 at 792.954 kb on + strand at 793.098 kb on + strand, within BWI76_RS03830 at 793.218 kb on - strand, within BWI76_RS03830 at 793.264 kb on + strand, within BWI76_RS03830 at 793.269 kb on + strand, within BWI76_RS03830 at 793.272 kb on - strand, within BWI76_RS03830 at 793.350 kb on - strand at 793.381 kb on + strand at 793.389 kb on - strand at 793.400 kb on + strand at 793.421 kb on + strand at 793.571 kb on - strand at 793.590 kb on - strand at 793.628 kb on + strand at 794.012 kb on + strand, within BWI76_RS03835 at 794.108 kb on - strand, within BWI76_RS03835 at 794.159 kb on + strand, within BWI76_RS03835 at 794.411 kb on + strand, within BWI76_RS03835 at 794.537 kb on - strand, within BWI76_RS03835 at 794.824 kb on - strand at 794.873 kb on + strand, within BWI76_RS03840 at 795.009 kb on + strand, within BWI76_RS03840 at 795.017 kb on - strand, within BWI76_RS03840 at 795.104 kb on + strand, within BWI76_RS03840 at 795.315 kb on + strand, within BWI76_RS03840 at 795.351 kb on - strand, within BWI76_RS03840 at 795.656 kb on - strand, within BWI76_RS03840 at 795.700 kb on + strand, within BWI76_RS03840
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 792,851 + BWI76_RS03830 0.61 -0.5 792,954 + +2.5 793,098 + BWI76_RS03830 0.77 -0.6 793,218 - BWI76_RS03830 0.85 -0.2 793,264 + BWI76_RS03830 0.88 -0.0 793,269 + BWI76_RS03830 0.88 -0.3 793,272 - BWI76_RS03830 0.88 -0.9 793,350 - -0.1 793,381 + -0.0 793,389 - -0.3 793,400 + -0.1 793,421 + -0.0 793,571 - +0.2 793,590 - +0.1 793,628 + +0.8 794,012 + BWI76_RS03835 0.20 -0.1 794,108 - BWI76_RS03835 0.31 -0.2 794,159 + BWI76_RS03835 0.37 -1.7 794,411 + BWI76_RS03835 0.65 -1.2 794,537 - BWI76_RS03835 0.79 -1.4 794,824 - -0.1 794,873 + BWI76_RS03840 0.10 -1.5 795,009 + BWI76_RS03840 0.20 -1.6 795,017 - BWI76_RS03840 0.21 +1.0 795,104 + BWI76_RS03840 0.27 -0.3 795,315 + BWI76_RS03840 0.42 +0.3 795,351 - BWI76_RS03840 0.45 +0.2 795,656 - BWI76_RS03840 0.67 -0.2 795,700 + BWI76_RS03840 0.70 +0.7
Or see this region's nucleotide sequence