Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02815

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02810 and BWI76_RS02815 are separated by 44 nucleotidesBWI76_RS02815 and BWI76_RS02820 are separated by 175 nucleotides BWI76_RS02810: BWI76_RS02810 - sugar ABC transporter permease YjfF, at 573,817 to 574,803 _RS02810 BWI76_RS02815: BWI76_RS02815 - fructose-bisphosphatase class I, at 574,848 to 575,846 _RS02815 BWI76_RS02820: BWI76_RS02820 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 576,022 to 577,395 _RS02820 Position (kb) 574 575 576Strain fitness (log2 ratio) -3 -2 -1 0 1at 573.881 kb on - strandat 574.280 kb on - strand, within BWI76_RS02810at 574.280 kb on - strand, within BWI76_RS02810at 574.549 kb on - strand, within BWI76_RS02810at 574.598 kb on + strand, within BWI76_RS02810at 574.690 kb on - strand, within BWI76_RS02810at 574.892 kb on - strandat 575.069 kb on + strand, within BWI76_RS02815at 575.351 kb on - strand, within BWI76_RS02815at 575.631 kb on - strand, within BWI76_RS02815at 575.769 kb on + strandat 575.865 kb on - strandat 575.922 kb on + strandat 575.928 kb on - strandat 575.979 kb on + strandat 576.100 kb on - strandat 576.100 kb on - strandat 576.128 kb on - strandat 576.546 kb on + strand, within BWI76_RS02820at 576.731 kb on + strand, within BWI76_RS02820at 576.739 kb on - strand, within BWI76_RS02820at 576.792 kb on + strand, within BWI76_RS02820

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
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573,881 - +0.7
574,280 - BWI76_RS02810 0.47 +0.1
574,280 - BWI76_RS02810 0.47 +0.1
574,549 - BWI76_RS02810 0.74 -0.4
574,598 + BWI76_RS02810 0.79 +0.3
574,690 - BWI76_RS02810 0.88 +0.1
574,892 - -1.9
575,069 + BWI76_RS02815 0.22 -2.9
575,351 - BWI76_RS02815 0.50 -1.9
575,631 - BWI76_RS02815 0.78 -2.3
575,769 + -2.4
575,865 - -0.4
575,922 + -0.7
575,928 - -1.3
575,979 + -0.2
576,100 - -0.2
576,100 - +0.6
576,128 - -1.9
576,546 + BWI76_RS02820 0.38 +0.1
576,731 + BWI76_RS02820 0.52 -0.2
576,739 - BWI76_RS02820 0.52 +0.8
576,792 + BWI76_RS02820 0.56 +0.1

Or see this region's nucleotide sequence