Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02250 and BWI76_RS02255 are separated by 121 nucleotides BWI76_RS02255 and BWI76_RS02260 overlap by 1 nucleotides
BWI76_RS02250: BWI76_RS02250 - proline/betaine transporter, at 462,856 to 464,358
_RS02250
BWI76_RS02255: BWI76_RS02255 - chaperone-modulator protein CbpM, at 464,480 to 464,785
_RS02255
BWI76_RS02260: BWI76_RS02260 - DNA-binding protein, at 464,785 to 465,705
_RS02260
Position (kb) 464
465 Strain fitness (log2 ratio) -2
-1
0
1 at 463.584 kb on - strand, within BWI76_RS02250 at 463.609 kb on - strand, within BWI76_RS02250 at 463.626 kb on - strand, within BWI76_RS02250 at 463.646 kb on + strand, within BWI76_RS02250 at 463.730 kb on + strand, within BWI76_RS02250 at 463.738 kb on - strand, within BWI76_RS02250 at 463.840 kb on - strand, within BWI76_RS02250 at 463.999 kb on + strand, within BWI76_RS02250 at 464.047 kb on - strand, within BWI76_RS02250 at 464.069 kb on + strand, within BWI76_RS02250 at 464.069 kb on + strand, within BWI76_RS02250 at 464.096 kb on + strand, within BWI76_RS02250 at 464.151 kb on + strand, within BWI76_RS02250 at 464.326 kb on - strand at 464.447 kb on - strand at 464.614 kb on + strand, within BWI76_RS02255 at 464.619 kb on - strand, within BWI76_RS02255 at 464.632 kb on - strand, within BWI76_RS02255 at 464.683 kb on + strand, within BWI76_RS02255 at 464.801 kb on + strand at 464.831 kb on + strand at 464.934 kb on + strand, within BWI76_RS02260 at 464.934 kb on + strand, within BWI76_RS02260 at 465.097 kb on - strand, within BWI76_RS02260 at 465.279 kb on + strand, within BWI76_RS02260 at 465.435 kb on + strand, within BWI76_RS02260 at 465.437 kb on + strand, within BWI76_RS02260 at 465.445 kb on - strand, within BWI76_RS02260 at 465.536 kb on - strand, within BWI76_RS02260 at 465.608 kb on - strand, within BWI76_RS02260 at 465.647 kb on - strand at 465.647 kb on - strand at 465.647 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 463,584 - BWI76_RS02250 0.48 -1.3 463,609 - BWI76_RS02250 0.50 -0.1 463,626 - BWI76_RS02250 0.51 -0.3 463,646 + BWI76_RS02250 0.53 +1.2 463,730 + BWI76_RS02250 0.58 -0.4 463,738 - BWI76_RS02250 0.59 +0.1 463,840 - BWI76_RS02250 0.65 +0.5 463,999 + BWI76_RS02250 0.76 -0.4 464,047 - BWI76_RS02250 0.79 +0.2 464,069 + BWI76_RS02250 0.81 +0.5 464,069 + BWI76_RS02250 0.81 +0.7 464,096 + BWI76_RS02250 0.83 -0.6 464,151 + BWI76_RS02250 0.86 +1.6 464,326 - -0.2 464,447 - +1.5 464,614 + BWI76_RS02255 0.44 -2.0 464,619 - BWI76_RS02255 0.45 -0.4 464,632 - BWI76_RS02255 0.50 -0.8 464,683 + BWI76_RS02255 0.66 -0.7 464,801 + +0.2 464,831 + +1.4 464,934 + BWI76_RS02260 0.16 -2.4 464,934 + BWI76_RS02260 0.16 -0.2 465,097 - BWI76_RS02260 0.34 -0.0 465,279 + BWI76_RS02260 0.54 -0.6 465,435 + BWI76_RS02260 0.71 -0.0 465,437 + BWI76_RS02260 0.71 +0.1 465,445 - BWI76_RS02260 0.72 -0.0 465,536 - BWI76_RS02260 0.82 +0.1 465,608 - BWI76_RS02260 0.89 -0.1 465,647 - -0.3 465,647 - -0.2 465,647 - +0.7
Or see this region's nucleotide sequence