Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01665 and BWI76_RS01670 are separated by 101 nucleotides BWI76_RS01670 and BWI76_RS01675 are separated by 13 nucleotides BWI76_RS01675 and BWI76_RS01680 are separated by 0 nucleotides
BWI76_RS01665: BWI76_RS01665 - Isocitrate lyase (EC 4.1.3.1) <small>(from data)</small>, at 338,551 to 339,855
_RS01665
BWI76_RS01670: BWI76_RS01670 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 339,957 to 341,699
_RS01670
BWI76_RS01675: BWI76_RS01675 - putative cytoplasmic protein, at 341,713 to 342,126
_RS01675
BWI76_RS01680: BWI76_RS01680 - transcriptional regulator IclR, at 342,127 to 342,954
_RS01680
Position (kb) 339
340
341
342 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 339.333 kb on - strand, within BWI76_RS01665 at 339.344 kb on + strand, within BWI76_RS01665 at 339.487 kb on + strand, within BWI76_RS01665 at 339.493 kb on + strand, within BWI76_RS01665 at 339.493 kb on + strand, within BWI76_RS01665 at 339.671 kb on - strand, within BWI76_RS01665 at 339.781 kb on - strand at 339.811 kb on - strand at 339.820 kb on + strand at 339.820 kb on + strand at 339.820 kb on + strand at 339.975 kb on - strand at 340.081 kb on + strand at 340.113 kb on - strand at 340.198 kb on + strand, within BWI76_RS01670 at 340.211 kb on - strand, within BWI76_RS01670 at 340.285 kb on + strand, within BWI76_RS01670 at 340.494 kb on - strand, within BWI76_RS01670 at 340.701 kb on + strand, within BWI76_RS01670 at 340.757 kb on + strand, within BWI76_RS01670 at 340.785 kb on + strand, within BWI76_RS01670 at 340.805 kb on + strand, within BWI76_RS01670 at 341.023 kb on + strand, within BWI76_RS01670 at 341.031 kb on - strand, within BWI76_RS01670 at 341.078 kb on - strand, within BWI76_RS01670 at 341.087 kb on - strand, within BWI76_RS01670 at 341.190 kb on - strand, within BWI76_RS01670 at 341.238 kb on - strand, within BWI76_RS01670 at 341.266 kb on + strand, within BWI76_RS01670 at 341.287 kb on + strand, within BWI76_RS01670 at 341.323 kb on + strand, within BWI76_RS01670 at 341.440 kb on + strand, within BWI76_RS01670 at 341.479 kb on - strand, within BWI76_RS01670 at 341.710 kb on + strand at 341.718 kb on - strand at 341.749 kb on - strand at 341.856 kb on - strand at 341.890 kb on - strand, within BWI76_RS01675 at 342.135 kb on + strand at 342.297 kb on - strand, within BWI76_RS01680 at 342.302 kb on - strand, within BWI76_RS01680 at 342.323 kb on - strand, within BWI76_RS01680 at 342.379 kb on - strand, within BWI76_RS01680 at 342.413 kb on - strand, within BWI76_RS01680 at 342.525 kb on + strand, within BWI76_RS01680 at 342.533 kb on - strand, within BWI76_RS01680 at 342.533 kb on - strand, within BWI76_RS01680
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 339,333 - BWI76_RS01665 0.60 -2.3 339,344 + BWI76_RS01665 0.61 -2.5 339,487 + BWI76_RS01665 0.72 -1.6 339,493 + BWI76_RS01665 0.72 +0.2 339,493 + BWI76_RS01665 0.72 -1.5 339,671 - BWI76_RS01665 0.86 -4.1 339,781 - -2.5 339,811 - -3.2 339,820 + -2.8 339,820 + -2.4 339,820 + -2.7 339,975 - -2.6 340,081 + -2.9 340,113 - -1.3 340,198 + BWI76_RS01670 0.14 -2.5 340,211 - BWI76_RS01670 0.15 -2.9 340,285 + BWI76_RS01670 0.19 -1.1 340,494 - BWI76_RS01670 0.31 -2.9 340,701 + BWI76_RS01670 0.43 -1.5 340,757 + BWI76_RS01670 0.46 -3.5 340,785 + BWI76_RS01670 0.48 -2.3 340,805 + BWI76_RS01670 0.49 -3.0 341,023 + BWI76_RS01670 0.61 -2.2 341,031 - BWI76_RS01670 0.62 -2.4 341,078 - BWI76_RS01670 0.64 -1.1 341,087 - BWI76_RS01670 0.65 -3.0 341,190 - BWI76_RS01670 0.71 -2.9 341,238 - BWI76_RS01670 0.73 -3.2 341,266 + BWI76_RS01670 0.75 -1.5 341,287 + BWI76_RS01670 0.76 -2.3 341,323 + BWI76_RS01670 0.78 -0.3 341,440 + BWI76_RS01670 0.85 -0.1 341,479 - BWI76_RS01670 0.87 -2.7 341,710 + -0.0 341,718 - -0.5 341,749 - -1.2 341,856 - +0.3 341,890 - BWI76_RS01675 0.43 +0.6 342,135 + -0.2 342,297 - BWI76_RS01680 0.21 +0.2 342,302 - BWI76_RS01680 0.21 -0.2 342,323 - BWI76_RS01680 0.24 -0.0 342,379 - BWI76_RS01680 0.30 -0.1 342,413 - BWI76_RS01680 0.35 +0.3 342,525 + BWI76_RS01680 0.48 -1.2 342,533 - BWI76_RS01680 0.49 -0.7 342,533 - BWI76_RS01680 0.49 +0.8
Or see this region's nucleotide sequence