Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01290 and BWI76_RS01295 are separated by 267 nucleotides BWI76_RS01295 and BWI76_RS01300 are separated by 138 nucleotides
BWI76_RS01290: BWI76_RS01290 - putative dienelactone hydrolase, at 265,101 to 265,913
_RS01290
BWI76_RS01295: BWI76_RS01295 - Uridine phosphorylase (EC 2.4.2.3) <small>(from data)</small>, at 266,181 to 266,942
_RS01295
BWI76_RS01300: BWI76_RS01300 - DNA recombination protein RmuC, at 267,081 to 268,529
_RS01300
Position (kb) 266
267 Strain fitness (log2 ratio) -1
0
1 at 265.279 kb on + strand, within BWI76_RS01290 at 265.420 kb on + strand, within BWI76_RS01290 at 265.420 kb on + strand, within BWI76_RS01290 at 265.444 kb on + strand, within BWI76_RS01290 at 265.468 kb on + strand, within BWI76_RS01290 at 265.545 kb on - strand, within BWI76_RS01290 at 265.846 kb on - strand at 265.961 kb on + strand at 265.961 kb on + strand at 266.033 kb on - strand at 266.233 kb on + strand at 266.251 kb on + strand at 266.354 kb on - strand, within BWI76_RS01295 at 266.362 kb on - strand at 266.423 kb on + strand, within BWI76_RS01295 at 266.533 kb on + strand, within BWI76_RS01295 at 266.600 kb on + strand, within BWI76_RS01295 at 266.600 kb on + strand, within BWI76_RS01295 at 266.670 kb on - strand, within BWI76_RS01295 at 266.678 kb on + strand, within BWI76_RS01295 at 266.945 kb on - strand at 267.210 kb on + strand at 267.264 kb on - strand, within BWI76_RS01300 at 267.264 kb on - strand, within BWI76_RS01300 at 267.275 kb on + strand, within BWI76_RS01300 at 267.527 kb on + strand, within BWI76_RS01300 at 267.535 kb on - strand, within BWI76_RS01300 at 267.738 kb on - strand, within BWI76_RS01300 at 267.764 kb on - strand, within BWI76_RS01300 at 267.921 kb on + strand, within BWI76_RS01300
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 265,279 + BWI76_RS01290 0.22 -0.4 265,420 + BWI76_RS01290 0.39 -0.0 265,420 + BWI76_RS01290 0.39 +0.5 265,444 + BWI76_RS01290 0.42 -0.5 265,468 + BWI76_RS01290 0.45 -0.1 265,545 - BWI76_RS01290 0.55 +0.7 265,846 - +0.3 265,961 + +0.7 265,961 + -0.1 266,033 - +0.1 266,233 + -1.3 266,251 + -0.5 266,354 - BWI76_RS01295 0.23 -0.3 266,362 - +1.1 266,423 + BWI76_RS01295 0.32 +0.1 266,533 + BWI76_RS01295 0.46 -0.7 266,600 + BWI76_RS01295 0.55 -0.3 266,600 + BWI76_RS01295 0.55 +0.2 266,670 - BWI76_RS01295 0.64 +0.0 266,678 + BWI76_RS01295 0.65 -0.4 266,945 - +0.1 267,210 + +0.2 267,264 - BWI76_RS01300 0.13 +0.6 267,264 - BWI76_RS01300 0.13 -0.4 267,275 + BWI76_RS01300 0.13 +0.1 267,527 + BWI76_RS01300 0.31 -0.2 267,535 - BWI76_RS01300 0.31 -0.7 267,738 - BWI76_RS01300 0.45 -0.2 267,764 - BWI76_RS01300 0.47 +0.9 267,921 + BWI76_RS01300 0.58 -0.3
Or see this region's nucleotide sequence