Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00800 and BWI76_RS00805 are separated by 166 nucleotides BWI76_RS00805 and BWI76_RS00810 are separated by 132 nucleotides
BWI76_RS00800: BWI76_RS00800 - LysR family transcriptional regulator, at 163,911 to 164,816
_RS00800
BWI76_RS00805: BWI76_RS00805 - 5,10-methylenetetrahydrofolate reductase, at 164,983 to 165,870
_RS00805
BWI76_RS00810: BWI76_RS00810 - DeoR family transcriptional regulator, at 166,003 to 166,752
_RS00810
Position (kb) 164
165
166 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 164.060 kb on + strand at 164.154 kb on + strand, within BWI76_RS00800 at 164.233 kb on + strand, within BWI76_RS00800 at 164.241 kb on - strand, within BWI76_RS00800 at 164.241 kb on - strand, within BWI76_RS00800 at 164.464 kb on + strand, within BWI76_RS00800 at 164.734 kb on - strand at 164.739 kb on - strand at 164.745 kb on - strand at 164.791 kb on - strand at 164.988 kb on - strand at 165.056 kb on - strand at 165.139 kb on - strand, within BWI76_RS00805 at 165.252 kb on - strand, within BWI76_RS00805 at 165.364 kb on - strand, within BWI76_RS00805 at 165.492 kb on + strand, within BWI76_RS00805 at 165.803 kb on + strand at 165.808 kb on + strand at 165.811 kb on - strand at 165.816 kb on - strand at 165.823 kb on + strand at 165.823 kb on + strand at 165.848 kb on + strand at 165.853 kb on + strand at 165.880 kb on + strand at 165.914 kb on + strand at 166.001 kb on + strand at 166.009 kb on - strand at 166.009 kb on - strand at 166.068 kb on - strand at 166.095 kb on + strand, within BWI76_RS00810 at 166.204 kb on - strand, within BWI76_RS00810 at 166.254 kb on + strand, within BWI76_RS00810 at 166.262 kb on - strand, within BWI76_RS00810 at 166.293 kb on - strand, within BWI76_RS00810 at 166.346 kb on - strand, within BWI76_RS00810 at 166.447 kb on - strand, within BWI76_RS00810 at 166.704 kb on + strand at 166.704 kb on + strand at 166.826 kb on + strand at 166.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 164,060 + -0.2 164,154 + BWI76_RS00800 0.27 -2.8 164,233 + BWI76_RS00800 0.36 -0.3 164,241 - BWI76_RS00800 0.36 +0.1 164,241 - BWI76_RS00800 0.36 -0.0 164,464 + BWI76_RS00800 0.61 -0.3 164,734 - -0.0 164,739 - -1.0 164,745 - +0.2 164,791 - +1.0 164,988 - -2.2 165,056 - -2.1 165,139 - BWI76_RS00805 0.18 -1.8 165,252 - BWI76_RS00805 0.30 -2.3 165,364 - BWI76_RS00805 0.43 -2.3 165,492 + BWI76_RS00805 0.57 -2.5 165,803 + -2.8 165,808 + -1.8 165,811 - -2.9 165,816 - -1.9 165,823 + -2.6 165,823 + -3.9 165,848 + -0.1 165,853 + -2.4 165,880 + -0.5 165,914 + -0.1 166,001 + +0.6 166,009 - -0.8 166,009 - +0.4 166,068 - -0.1 166,095 + BWI76_RS00810 0.12 +0.3 166,204 - BWI76_RS00810 0.27 -0.6 166,254 + BWI76_RS00810 0.33 -0.2 166,262 - BWI76_RS00810 0.35 -0.1 166,293 - BWI76_RS00810 0.39 -0.0 166,346 - BWI76_RS00810 0.46 +0.2 166,447 - BWI76_RS00810 0.59 -0.4 166,704 + -0.2 166,704 + -0.3 166,826 + -0.9 166,827 + +1.2
Or see this region's nucleotide sequence