Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00735

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00730 and BWI76_RS00735 are separated by 202 nucleotidesBWI76_RS00735 and BWI76_RS00740 are separated by 60 nucleotidesBWI76_RS00740 and BWI76_RS00745 are separated by 92 nucleotides BWI76_RS00730: BWI76_RS00730 - cation-efflux pump FieF, at 148,400 to 149,296 _RS00730 BWI76_RS00735: BWI76_RS00735 - ATP-dependent 6-phosphofructokinase, at 149,499 to 150,461 _RS00735 BWI76_RS00740: BWI76_RS00740 - ribonuclease E activity regulator RraA, at 150,522 to 151,007 _RS00740 BWI76_RS00745: BWI76_RS00745 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 151,100 to 152,026 _RS00745 Position (kb) 149 150 151Strain fitness (log2 ratio) -1 0 1at 148.500 kb on - strand, within BWI76_RS00730at 148.503 kb on - strand, within BWI76_RS00730at 148.575 kb on - strand, within BWI76_RS00730at 148.610 kb on - strand, within BWI76_RS00730at 148.742 kb on + strand, within BWI76_RS00730at 148.743 kb on + strand, within BWI76_RS00730at 148.774 kb on + strand, within BWI76_RS00730at 148.782 kb on - strand, within BWI76_RS00730at 148.942 kb on - strand, within BWI76_RS00730at 148.992 kb on - strand, within BWI76_RS00730at 149.029 kb on + strand, within BWI76_RS00730at 149.436 kb on + strandat 149.436 kb on + strandat 149.436 kb on + strandat 149.436 kb on + strandat 149.436 kb on + strandat 150.559 kb on - strandat 150.683 kb on - strand, within BWI76_RS00740at 150.827 kb on + strand, within BWI76_RS00740at 150.827 kb on - strand, within BWI76_RS00740at 150.867 kb on - strand, within BWI76_RS00740at 150.867 kb on - strand, within BWI76_RS00740at 150.963 kb on - strandat 151.169 kb on - strandat 151.176 kb on - strandat 151.316 kb on - strand, within BWI76_RS00745at 151.316 kb on - strand, within BWI76_RS00745at 151.443 kb on + strand, within BWI76_RS00745

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
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148,500 - BWI76_RS00730 0.11 +0.5
148,503 - BWI76_RS00730 0.11 -0.5
148,575 - BWI76_RS00730 0.20 +0.2
148,610 - BWI76_RS00730 0.23 +0.2
148,742 + BWI76_RS00730 0.38 +0.3
148,743 + BWI76_RS00730 0.38 +0.2
148,774 + BWI76_RS00730 0.42 -0.7
148,782 - BWI76_RS00730 0.43 +0.3
148,942 - BWI76_RS00730 0.60 +0.1
148,992 - BWI76_RS00730 0.66 +1.0
149,029 + BWI76_RS00730 0.70 -0.3
149,436 + -0.5
149,436 + +0.4
149,436 + -0.7
149,436 + -0.9
149,436 + -0.1
150,559 - -0.4
150,683 - BWI76_RS00740 0.33 +0.4
150,827 + BWI76_RS00740 0.63 -0.3
150,827 - BWI76_RS00740 0.63 +0.9
150,867 - BWI76_RS00740 0.71 +0.2
150,867 - BWI76_RS00740 0.71 +0.8
150,963 - +0.4
151,169 - +0.1
151,176 - -0.1
151,316 - BWI76_RS00745 0.23 -0.4
151,316 - BWI76_RS00745 0.23 -0.0
151,443 + BWI76_RS00745 0.37 -0.8

Or see this region's nucleotide sequence