Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00730 and BWI76_RS00735 are separated by 202 nucleotides BWI76_RS00735 and BWI76_RS00740 are separated by 60 nucleotides BWI76_RS00740 and BWI76_RS00745 are separated by 92 nucleotides
BWI76_RS00730: BWI76_RS00730 - cation-efflux pump FieF, at 148,400 to 149,296
_RS00730
BWI76_RS00735: BWI76_RS00735 - ATP-dependent 6-phosphofructokinase, at 149,499 to 150,461
_RS00735
BWI76_RS00740: BWI76_RS00740 - ribonuclease E activity regulator RraA, at 150,522 to 151,007
_RS00740
BWI76_RS00745: BWI76_RS00745 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 151,100 to 152,026
_RS00745
Position (kb) 149
150
151 Strain fitness (log2 ratio) -1
0
1 at 148.500 kb on - strand, within BWI76_RS00730 at 148.503 kb on - strand, within BWI76_RS00730 at 148.575 kb on - strand, within BWI76_RS00730 at 148.610 kb on - strand, within BWI76_RS00730 at 148.742 kb on + strand, within BWI76_RS00730 at 148.743 kb on + strand, within BWI76_RS00730 at 148.774 kb on + strand, within BWI76_RS00730 at 148.782 kb on - strand, within BWI76_RS00730 at 148.942 kb on - strand, within BWI76_RS00730 at 148.992 kb on - strand, within BWI76_RS00730 at 149.029 kb on + strand, within BWI76_RS00730 at 149.436 kb on + strand at 149.436 kb on + strand at 149.436 kb on + strand at 149.436 kb on + strand at 149.436 kb on + strand at 150.559 kb on - strand at 150.683 kb on - strand, within BWI76_RS00740 at 150.827 kb on + strand, within BWI76_RS00740 at 150.827 kb on - strand, within BWI76_RS00740 at 150.867 kb on - strand, within BWI76_RS00740 at 150.867 kb on - strand, within BWI76_RS00740 at 150.963 kb on - strand at 151.169 kb on - strand at 151.176 kb on - strand at 151.316 kb on - strand, within BWI76_RS00745 at 151.316 kb on - strand, within BWI76_RS00745 at 151.443 kb on + strand, within BWI76_RS00745
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 148,500 - BWI76_RS00730 0.11 +0.5 148,503 - BWI76_RS00730 0.11 -0.5 148,575 - BWI76_RS00730 0.20 +0.2 148,610 - BWI76_RS00730 0.23 +0.2 148,742 + BWI76_RS00730 0.38 +0.3 148,743 + BWI76_RS00730 0.38 +0.2 148,774 + BWI76_RS00730 0.42 -0.7 148,782 - BWI76_RS00730 0.43 +0.3 148,942 - BWI76_RS00730 0.60 +0.1 148,992 - BWI76_RS00730 0.66 +1.0 149,029 + BWI76_RS00730 0.70 -0.3 149,436 + -0.5 149,436 + +0.4 149,436 + -0.7 149,436 + -0.9 149,436 + -0.1 150,559 - -0.4 150,683 - BWI76_RS00740 0.33 +0.4 150,827 + BWI76_RS00740 0.63 -0.3 150,827 - BWI76_RS00740 0.63 +0.9 150,867 - BWI76_RS00740 0.71 +0.2 150,867 - BWI76_RS00740 0.71 +0.8 150,963 - +0.4 151,169 - +0.1 151,176 - -0.1 151,316 - BWI76_RS00745 0.23 -0.4 151,316 - BWI76_RS00745 0.23 -0.0 151,443 + BWI76_RS00745 0.37 -0.8
Or see this region's nucleotide sequence