Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00545

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
110,589	+				-0.8
110,589	+		BWI76_RS00540	0.27	-0.1
110,594	+		BWI76_RS00540	0.28	-0.8
110,597	+		BWI76_RS00540	0.28	-0.2
110,597	-		BWI76_RS00540	0.28	+0.1
110,597	-		BWI76_RS00540	0.28	+0.4
110,597	-		BWI76_RS00540	0.28	+0.3
110,599	+		BWI76_RS00540	0.28	-0.8
110,599	+		BWI76_RS00540	0.28	-0.4
110,607	-		BWI76_RS00540	0.29	-0.2
110,607	-		BWI76_RS00540	0.29	+0.3
110,607	-		BWI76_RS00540	0.29	+0.3
110,607	-		BWI76_RS00540	0.29	-1.1
110,607	-		BWI76_RS00540	0.29	-0.2
110,607	-		BWI76_RS00540	0.29	-0.4
110,607	-		BWI76_RS00540	0.29	-0.0
110,607	-		BWI76_RS00540	0.29	-0.2
110,607	-		BWI76_RS00540	0.29	-0.5
110,607	-		BWI76_RS00540	0.29	+0.0
110,607	-		BWI76_RS00540	0.29	-0.4
110,607	-		BWI76_RS00540	0.29	-1.2
110,607	-		BWI76_RS00540	0.29	+0.2
110,624	+		BWI76_RS00540	0.30	-0.2
110,688	+		BWI76_RS00540	0.35	+0.6
110,699	+		BWI76_RS00540	0.35	-0.2
110,701	+		BWI76_RS00540	0.35	+0.2
110,712	+		BWI76_RS00540	0.36	-0.1
110,720	-		BWI76_RS00540	0.37	-0.2
110,722	+		BWI76_RS00540	0.37	-1.1
110,736	-		BWI76_RS00540	0.38	+0.3
110,745	-		BWI76_RS00540	0.39	+0.1
110,767	-		BWI76_RS00540	0.40	-0.3
110,770	+		BWI76_RS00540	0.40	+0.4
110,770	+		BWI76_RS00540	0.40	-1.3
110,770	+		BWI76_RS00540	0.40	-1.1
110,778	-		BWI76_RS00540	0.41	+0.2
110,801	+		BWI76_RS00540	0.43	+1.0
110,806	+		BWI76_RS00540	0.43	-1.1
110,821	-		BWI76_RS00540	0.44	+0.3
110,826	+		BWI76_RS00540	0.45	+0.1
110,845	-		BWI76_RS00540	0.46	+1.3
110,870	-		BWI76_RS00540	0.48	+0.5
110,933	+		BWI76_RS00540	0.52	-0.3
110,987	+		BWI76_RS00540	0.56	-0.0
110,994	+		BWI76_RS00540	0.57	-0.0
110,994	+		BWI76_RS00540	0.57	-0.2
110,994	+		BWI76_RS00540	0.57	-0.2
110,994	+		BWI76_RS00540	0.57	-1.3
110,994	+		BWI76_RS00540	0.57	-2.2
110,995	-		BWI76_RS00540	0.57	-1.1
111,002	-		BWI76_RS00540	0.57	+0.4
111,002	-		BWI76_RS00540	0.57	+0.9
111,021	-		BWI76_RS00540	0.59	+0.4
111,037	+		BWI76_RS00540	0.60	+0.3
111,037	+		BWI76_RS00540	0.60	-0.1
111,112	+		BWI76_RS00540	0.65	-1.4
111,122	+		BWI76_RS00540	0.66	-0.3
111,150	-		BWI76_RS00540	0.68	-0.6
111,214	+		BWI76_RS00540	0.73	-0.2
111,254	-		BWI76_RS00540	0.76	-0.3
111,309	-		BWI76_RS00540	0.80	-0.1
111,360	+		BWI76_RS00540	0.84	+1.1
111,360	-		BWI76_RS00540	0.84	-0.2
111,396	+		BWI76_RS00540	0.86	-1.0
111,397	-		BWI76_RS00540	0.86	+1.5
111,404	-				-0.3
111,411	+		BWI76_RS00540	0.87	-0.1
111,416	+		BWI76_RS00540	0.88	-0.9
111,424	-		BWI76_RS00540	0.88	-0.5
111,426	+		BWI76_RS00540	0.88	+0.3
111,426	+		BWI76_RS00540	0.88	-0.1
111,426	+		BWI76_RS00540	0.88	-0.2
111,434	-		BWI76_RS00540	0.89	+0.1
111,434	-		BWI76_RS00540	0.89	-0.3
111,451	+				+0.1
111,452	+				-2.4
111,452	+				+0.9
111,460	-				-0.3
111,460	-				-0.4
111,465	-				+0.1
111,520	+				+0.1
111,528	-				-0.6
111,528	-				-0.5
111,543	-				-0.3
111,558	+				+1.8
111,558	-				+0.1
111,564	+				-1.1
111,566	+				+0.6
111,584	+				-1.3
111,584	+				+0.2
111,584	+				+0.1
111,584	+				-0.1
111,584	-				+1.3
111,584	-				-0.6
111,586	-				+0.4
111,592	-				-0.4
111,592	-				+0.1
111,592	-				+0.1
111,637	+				+0.2
111,652	+				+0.0
111,652	+				-1.7
111,652	+				-0.4
111,652	+				-0.6
111,652	+				+0.4
111,652	+				+0.5
111,652	+				-0.0
111,652	+				-0.5
111,652	+				-0.2
111,652	+				-0.1
111,660	-		BWI76_RS00545	0.11	-0.1
111,660	-		BWI76_RS00545	0.11	+1.2
111,660	-		BWI76_RS00545	0.11	+1.7
111,660	-		BWI76_RS00545	0.11	+1.5
111,660	-		BWI76_RS00545	0.11	-0.3
111,660	-		BWI76_RS00545	0.11	-0.7
111,660	-		BWI76_RS00545	0.11	+0.7
111,660	-		BWI76_RS00545	0.11	+0.3
111,660	-		BWI76_RS00545	0.11	-0.9
111,694	+		BWI76_RS00545	0.15	+0.3
111,694	+		BWI76_RS00545	0.15	+0.3
111,694	+		BWI76_RS00545	0.15	-0.4
111,694	+		BWI76_RS00545	0.15	-0.5
111,702	-		BWI76_RS00545	0.16	-0.3
111,702	-		BWI76_RS00545	0.16	+0.9
111,702	-		BWI76_RS00545	0.16	+0.1
111,720	-		BWI76_RS00545	0.18	-0.8
111,721	+		BWI76_RS00545	0.18	+1.7
111,759	-		BWI76_RS00545	0.22	+0.9
111,766	-		BWI76_RS00545	0.23	-0.0
111,795	+		BWI76_RS00545	0.27	+0.1
111,795	+		BWI76_RS00545	0.27	+0.5
111,795	-		BWI76_RS00545	0.27	+0.5
111,805	+		BWI76_RS00545	0.28	+0.3
111,811	+		BWI76_RS00545	0.29	-0.1
111,823	+		BWI76_RS00545	0.30	-0.3
111,828	+		BWI76_RS00545	0.31	-0.1
111,828	+		BWI76_RS00545	0.31	+1.4
111,828	+		BWI76_RS00545	0.31	+0.2
111,831	-		BWI76_RS00545	0.31	+0.0
111,831	-		BWI76_RS00545	0.31	+0.0
111,836	-		BWI76_RS00545	0.32	-1.1
111,856	-		BWI76_RS00545	0.34	-0.3
111,861	+		BWI76_RS00545	0.35	-0.9
111,868	+		BWI76_RS00545	0.35	-0.3
111,876	+		BWI76_RS00545	0.36	+0.6
111,883	-		BWI76_RS00545	0.37	+0.0
111,969	+		BWI76_RS00545	0.47	+1.2
111,996	+		BWI76_RS00545	0.51	-0.1
112,009	-		BWI76_RS00545	0.52	-0.0
112,020	+		BWI76_RS00545	0.53	+0.6
112,051	-		BWI76_RS00545	0.57	-0.4
112,058	-		BWI76_RS00545	0.58	+0.2
112,068	-		BWI76_RS00545	0.59	-0.1
112,113	+		BWI76_RS00545	0.64	-1.6
112,115	-		BWI76_RS00545	0.65	+0.4
112,115	-		BWI76_RS00545	0.65	+0.2
112,126	-		BWI76_RS00545	0.66	+0.2
112,166	-		BWI76_RS00545	0.71	-0.2
112,188	+		BWI76_RS00545	0.73	-0.1
112,191	-		BWI76_RS00545	0.74	+0.3
112,209	-		BWI76_RS00545	0.76	+0.3
112,229	-		BWI76_RS00545	0.78	+0.4
112,229	-		BWI76_RS00545	0.78	-0.3
112,241	-		BWI76_RS00545	0.80	+0.3
112,245	+		BWI76_RS00545	0.80	-0.1
112,253	-		BWI76_RS00545	0.81	-2.0
112,253	-		BWI76_RS00545	0.81	-0.3
112,256	+		BWI76_RS00545	0.81	+0.3
112,270	-		BWI76_RS00545	0.83	-2.0
112,274	+		BWI76_RS00545	0.84	+0.5
112,296	-		BWI76_RS00545	0.86	-0.2
112,296	-		BWI76_RS00545	0.86	+0.3
112,296	-		BWI76_RS00545	0.86	-0.7
112,302	+		BWI76_RS00545	0.87	+0.9
112,306	-		BWI76_RS00545	0.87	-0.1
112,306	-		BWI76_RS00545	0.87	+0.1
112,326	+		BWI76_RS00545	0.90	+1.7
112,326	+				+0.1
112,326	+		BWI76_RS00545	0.90	+0.2
112,326	+		BWI76_RS00545	0.90	+0.8
112,326	+		BWI76_RS00545	0.90	+2.7
112,326	+		BWI76_RS00545	0.90	-0.1
112,334	-				-1.7
112,334	-				-0.4
112,334	-				+0.1
112,375	+				+1.3
112,383	-				+0.4
112,383	-				-0.3
112,383	-				-0.9
112,403	+				+0.1
112,427	-				+1.3
112,442	-				+0.2
112,442	-				-0.1
112,444	+				+0.2
112,444	+				-0.1
112,444	+				-0.4
112,444	+				+0.6
112,447	+				-1.3
112,447	-				-0.4
112,449	+				-0.1
112,452	+				+0.4
112,455	-				+0.2
112,457	-				+0.2
112,459	+				+0.8
112,460	-				+0.6
112,471	+				-1.1
112,471	+				+1.1
112,471	+				-1.1
112,479	-				-0.7
112,479	-				+0.7
112,481	+				-0.4
112,512	-		BWI76_RS00550	0.16	+0.1
112,514	+		BWI76_RS00550	0.17	-0.1
112,519	+		BWI76_RS00550	0.19	+0.2
112,519	+		BWI76_RS00550	0.19	+0.0
112,522	-		BWI76_RS00550	0.20	+0.2
112,524	+		BWI76_RS00550	0.20	+0.1
112,532	-		BWI76_RS00550	0.23	+0.1
112,534	+		BWI76_RS00550	0.24	+0.2
112,536	+		BWI76_RS00550	0.25	-1.4
112,536	+		BWI76_RS00550	0.25	-1.1
112,536	+		BWI76_RS00550	0.25	-0.1
112,536	+		BWI76_RS00550	0.25	+0.3
112,536	+		BWI76_RS00550	0.25	-0.1
112,536	+		BWI76_RS00550	0.25	+0.2
112,544	-		BWI76_RS00550	0.28	+0.5
112,546	-		BWI76_RS00550	0.29	+0.4
112,563	+		BWI76_RS00550	0.35	+0.0
112,574	+		BWI76_RS00550	0.39	+0.5
112,577	+		BWI76_RS00550	0.40	-0.3
112,577	+		BWI76_RS00550	0.40	+0.2
112,582	+		BWI76_RS00550	0.42	-0.4
112,590	-		BWI76_RS00550	0.45	+0.3
112,590	-		BWI76_RS00550	0.45	-0.2
112,590	-		BWI76_RS00550	0.45	-0.2
112,613	+		BWI76_RS00550	0.53	+0.1
112,614	+		BWI76_RS00550	0.54	+0.1
112,614	+		BWI76_RS00550	0.54	-0.0
112,614	+		BWI76_RS00550	0.54	-1.0
112,622	-		BWI76_RS00550	0.57	+0.1
112,622	-		BWI76_RS00550	0.57	+2.0
112,627	+		BWI76_RS00550	0.59	-0.3
112,632	+		BWI76_RS00550	0.60	+1.3
112,632	+		BWI76_RS00550	0.60	-1.3
112,632	+		BWI76_RS00550	0.60	-1.1
112,635	-		BWI76_RS00550	0.61	-0.2
112,635	-		BWI76_RS00550	0.61	-0.6
112,635	-		BWI76_RS00550	0.61	-0.0
112,652	+		BWI76_RS00550	0.68	-0.9
112,657	+		BWI76_RS00550	0.70	-0.6
112,675	+		BWI76_RS00550	0.76	+0.0
112,675	+		BWI76_RS00550	0.76	+0.4
112,675	+				+0.1
112,677	+		BWI76_RS00550	0.77	-0.3
112,677	+		BWI76_RS00550	0.77	+0.5
112,690	+		BWI76_RS00550	0.82	-0.2
112,690	+		BWI76_RS00550	0.82	+0.8
112,698	+		BWI76_RS00550	0.85	-0.8
112,698	+		BWI76_RS00550	0.85	-0.9
112,706	+		BWI76_RS00550	0.88	-0.1
112,706	-		BWI76_RS00550	0.88	+0.7
112,768	+				+0.1
112,768	+				+0.0
112,768	+				+0.7
112,768	+				+0.2
112,768	+				-0.1
112,772	-				-0.0
112,776	-				-1.8
112,779	+				-0.2
112,794	+		BWI76_RS00555	0.11	+0.1
112,799	+		BWI76_RS00555	0.12	-1.1
112,802	-		BWI76_RS00555	0.12	+0.5
112,802	-		BWI76_RS00555	0.12	+0.0
112,802	-		BWI76_RS00555	0.12	+0.2
112,802	-		BWI76_RS00555	0.12	+0.1
112,810	-				+2.7
112,810	-		BWI76_RS00555	0.14	+0.0
112,810	-		BWI76_RS00555	0.14	-0.2
112,820	-		BWI76_RS00555	0.16	-0.4
112,856	+		BWI76_RS00555	0.25	-1.1
112,864	-		BWI76_RS00555	0.26	-2.3
112,864	-		BWI76_RS00555	0.26	-0.2
112,906	-		BWI76_RS00555	0.36	-0.2
112,906	-		BWI76_RS00555	0.36	+0.2
112,956	+		BWI76_RS00555	0.47	-0.4
112,983	+		BWI76_RS00555	0.54	-1.3
112,983	+		BWI76_RS00555	0.54	+2.3
112,983	+		BWI76_RS00555	0.54	+0.4
112,990	-		BWI76_RS00555	0.55	+1.4
112,991	-		BWI76_RS00555	0.55	-0.0
112,991	-		BWI76_RS00555	0.55	-1.1
112,991	-		BWI76_RS00555	0.55	+0.7
112,991	-		BWI76_RS00555	0.55	-1.3
112,991	-		BWI76_RS00555	0.55	+0.3
112,991	-		BWI76_RS00555	0.55	+0.4
112,991	-		BWI76_RS00555	0.55	+0.5
113,073	-		BWI76_RS00555	0.74	-0.4
113,073	-		BWI76_RS00555	0.74	+0.8
113,079	+		BWI76_RS00555	0.76	-0.2
113,110	-		BWI76_RS00555	0.83	-0.2
113,157	+				+0.1
113,157	+				-0.8
113,165	-				+0.2
113,165	-				+0.5
113,168	-				-0.3
113,179	+				+0.0
113,179	+				-0.8
113,187	-				+1.0
113,193	+				+1.1
113,309	+		BWI76_RS00560	0.23	-0.7
113,346	+		BWI76_RS00560	0.30	+0.7