Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18140

Experiment: MRS + kanamycin Time9hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MRS + kanamycin Time9hr
1,853,449	-		BBR_RS18130	0.29	-2.2
1,853,462	-		BBR_RS18130	0.30	-0.8
1,853,462	-		BBR_RS18130	0.30	+0.8
1,853,472	-		BBR_RS18130	0.31	-1.1
1,853,472	-		BBR_RS18130	0.31	+2.1
1,853,472	-		BBR_RS18130	0.31	+1.1
1,853,498	+		BBR_RS18130	0.34	+1.1
1,853,503	+		BBR_RS18130	0.34	-0.6
1,853,504	-		BBR_RS18130	0.34	+1.6
1,853,504	-		BBR_RS18130	0.34	-0.3
1,853,505	+		BBR_RS18130	0.34	+1.7
1,853,535	-		BBR_RS18130	0.38	+1.9
1,853,571	+		BBR_RS18130	0.41	+1.4
1,853,571	-		BBR_RS18130	0.41	+0.3
1,853,574	+		BBR_RS18130	0.42	-0.9
1,853,588	-		BBR_RS18130	0.43	-0.9
1,853,661	-		BBR_RS18130	0.51	-0.2
1,853,677	-		BBR_RS18130	0.53	-0.0
1,853,679	+		BBR_RS18130	0.53	+0.2
1,853,681	+		BBR_RS18130	0.53	+2.2
1,853,681	+		BBR_RS18130	0.53	-0.9
1,853,681	+		BBR_RS18130	0.53	-1.1
1,853,687	-		BBR_RS18130	0.54	+0.6
1,853,687	-		BBR_RS18130	0.54	-0.4
1,853,687	-		BBR_RS18130	0.54	-0.0
1,853,687	-		BBR_RS18130	0.54	+0.3
1,853,705	+		BBR_RS18130	0.56	+0.7
1,853,711	+		BBR_RS18130	0.56	-0.1
1,853,719	-		BBR_RS18130	0.57	+0.1
1,853,724	-		BBR_RS18130	0.58	-0.9
1,853,742	-		BBR_RS18130	0.59	+1.4
1,853,743	+		BBR_RS18130	0.60	-1.0
1,853,748	+		BBR_RS18130	0.60	+1.1
1,853,748	+		BBR_RS18130	0.60	-1.3
1,853,751	-		BBR_RS18130	0.60	+2.1
1,853,753	+		BBR_RS18130	0.61	+0.6
1,853,753	+		BBR_RS18130	0.61	+0.8
1,853,756	-		BBR_RS18130	0.61	+2.2
1,853,758	+		BBR_RS18130	0.61	-0.8
1,853,758	+		BBR_RS18130	0.61	-0.6
1,853,758	+		BBR_RS18130	0.61	-0.6
1,853,761	-		BBR_RS18130	0.61	+0.4
1,853,761	-		BBR_RS18130	0.61	-1.5
1,853,766	-		BBR_RS18130	0.62	+1.2
1,853,804	+		BBR_RS18130	0.66	+0.1
1,853,819	+		BBR_RS18130	0.68	+1.2
1,853,819	+		BBR_RS18130	0.68	+1.1
1,853,824	-		BBR_RS18130	0.68	+0.5
1,853,869	-		BBR_RS18130	0.73	-0.9
1,853,878	+		BBR_RS18130	0.74	-3.1
1,853,879	-		BBR_RS18130	0.74	-0.6
1,853,892	+		BBR_RS18130	0.75	-1.5
1,853,894	+		BBR_RS18130	0.75	+1.3
1,853,900	-		BBR_RS18130	0.76	-0.4
1,853,912	-		BBR_RS18130	0.77	-0.9
1,853,916	+		BBR_RS18130	0.78	-1.2
1,853,973	-		BBR_RS18130	0.84	+0.2
1,853,980	-		BBR_RS18130	0.84	+0.1
1,853,985	+		BBR_RS18130	0.85	+1.9
1,854,031	+		BBR_RS18130	0.90	-0.9
1,854,042	+				+0.7
1,854,042	+				+0.6
1,854,042	+				+1.2
1,854,059	+				+1.9
1,854,059	+				+0.7
1,854,074	+				-0.9
1,854,074	+				+0.6
1,854,098	-				+1.1
1,854,113	+				+0.6
1,854,155	+		BBR_RS18135	0.12	+0.2
1,854,155	+		BBR_RS18135	0.12	+0.6
1,854,164	+		BBR_RS18135	0.16	+1.4
1,854,177	-		BBR_RS18135	0.23	+0.2
1,854,192	-		BBR_RS18135	0.30	+1.2
1,854,211	-		BBR_RS18135	0.40	-0.4
1,854,233	+		BBR_RS18135	0.51	+1.1
1,854,353	-				+1.6
1,854,364	-				-0.1
1,854,424	+		BBR_RS18140	0.19	-0.9
1,854,445	-		BBR_RS18140	0.47	+1.6
1,854,451	-		BBR_RS18140	0.55	+3.1
1,854,527	+				-0.9
1,854,540	-				-0.2
1,854,540	-				+0.7
1,854,540	-				+0.1
1,854,591	+				+0.1
1,854,637	+				+0.6
1,854,637	+				-1.0
1,854,637	+				-0.9
1,854,637	+				+2.1
1,854,637	-				+0.7
1,854,639	+				-1.2
1,854,639	+				-0.4
1,854,639	+				-0.6
1,854,639	+				-0.5
1,854,642	+				-0.6
1,854,645	-				-1.9
1,854,645	-				-0.1
1,854,645	-				+1.6
1,854,645	-				+1.2
1,854,645	-				-1.9
1,854,645	-				+2.6
1,854,645	-				-1.0
1,854,647	-				-0.6
1,854,647	-				-0.8
1,854,647	-				+1.9
1,854,647	-				-2.4
1,854,647	-				-0.8
1,854,647	-				-1.3
1,854,693	+				-0.2
1,854,694	-				-1.9
1,854,696	-				-0.5
1,854,731	-				+1.6
1,854,736	-				-0.4
1,854,746	+				+2.5
1,854,749	-				-0.1
1,854,750	+				+0.4
1,854,753	+				+3.1
1,854,758	+				-0.2
1,854,761	-				+1.3
1,854,771	-				+0.2
1,854,773	+				+0.5
1,854,773	+				+0.5
1,854,773	+				+0.8
1,854,773	+				+1.2
1,854,776	-				-3.2
1,854,781	-				+2.4
1,854,824	-				-0.1
1,854,866	+		BBR_RS18145	0.11	+1.1
1,854,874	+		BBR_RS18145	0.12	+0.9
1,854,888	+		BBR_RS18145	0.12	-0.4
1,854,888	+		BBR_RS18145	0.12	-2.8
1,854,891	-		BBR_RS18145	0.13	-0.6
1,854,925	+		BBR_RS18145	0.15	-0.4
1,854,925	-		BBR_RS18145	0.15	-0.0
1,854,954	-		BBR_RS18145	0.16	+0.8
1,855,016	-		BBR_RS18145	0.20	+1.1
1,855,018	-		BBR_RS18145	0.20	-0.2
1,855,018	-		BBR_RS18145	0.20	-1.9
1,855,018	-		BBR_RS18145	0.20	+1.1
1,855,037	-		BBR_RS18145	0.21	-1.5
1,855,043	-		BBR_RS18145	0.21	+1.7
1,855,043	-		BBR_RS18145	0.21	-1.4
1,855,047	-		BBR_RS18145	0.21	+3.1
1,855,078	-		BBR_RS18145	0.23	+0.1
1,855,080	+		BBR_RS18145	0.23	-2.8
1,855,085	+		BBR_RS18145	0.23	+1.1
1,855,088	-		BBR_RS18145	0.24	-1.8
1,855,088	-		BBR_RS18145	0.24	+1.4
1,855,095	+		BBR_RS18145	0.24	-0.7
1,855,101	+		BBR_RS18145	0.24	-1.5
1,855,103	-		BBR_RS18145	0.24	+1.4
1,855,103	-		BBR_RS18145	0.24	+0.9
1,855,106	+		BBR_RS18145	0.25	+0.8
1,855,109	-		BBR_RS18145	0.25	+0.9
1,855,114	-		BBR_RS18145	0.25	-1.2
1,855,114	-		BBR_RS18145	0.25	-0.4
1,855,124	-		BBR_RS18145	0.26	+0.6
1,855,125	+		BBR_RS18145	0.26	-0.9
1,855,125	+		BBR_RS18145	0.26	+0.8
1,855,133	-		BBR_RS18145	0.26	+0.1
1,855,162	+		BBR_RS18145	0.28	+1.1
1,855,162	+		BBR_RS18145	0.28	-0.7
1,855,162	+		BBR_RS18145	0.28	+0.8
1,855,162	+		BBR_RS18145	0.28	-2.4
1,855,162	+		BBR_RS18145	0.28	-0.2
1,855,162	+		BBR_RS18145	0.28	+0.3
1,855,162	+		BBR_RS18145	0.28	-1.8
1,855,162	+		BBR_RS18145	0.28	-0.8
1,855,170	-		BBR_RS18145	0.28	-0.8
1,855,170	-		BBR_RS18145	0.28	-0.9
1,855,170	-		BBR_RS18145	0.28	-0.4
1,855,170	-		BBR_RS18145	0.28	-0.5
1,855,172	-		BBR_RS18145	0.28	+2.4
1,855,179	-		BBR_RS18145	0.29	+1.3
1,855,202	-		BBR_RS18145	0.30	+1.4
1,855,209	+		BBR_RS18145	0.30	-2.4
1,855,246	+		BBR_RS18145	0.32	-0.3
1,855,252	+		BBR_RS18145	0.33	-0.9
1,855,260	-		BBR_RS18145	0.33	-0.9
1,855,265	+		BBR_RS18145	0.33	+1.6
1,855,275	+		BBR_RS18145	0.34	+3.2
1,855,275	-		BBR_RS18145	0.34	+3.6
1,855,281	+		BBR_RS18145	0.34	-1.2
1,855,281	+		BBR_RS18145	0.34	+0.3
1,855,281	+		BBR_RS18145	0.34	+0.4
1,855,289	-		BBR_RS18145	0.35	+1.3
1,855,289	-		BBR_RS18145	0.35	+1.3
1,855,289	-		BBR_RS18145	0.35	+1.1
1,855,289	-		BBR_RS18145	0.35	+0.2
1,855,296	-		BBR_RS18145	0.35	+1.6
1,855,298	-		BBR_RS18145	0.35	+0.4
1,855,299	-		BBR_RS18145	0.35	-1.4
1,855,299	-		BBR_RS18145	0.35	+0.9
1,855,319	-		BBR_RS18145	0.36	-0.9
1,855,319	-		BBR_RS18145	0.36	+1.4
1,855,319	-		BBR_RS18145	0.36	-0.7
1,855,319	-		BBR_RS18145	0.36	-0.5
1,855,321	+		BBR_RS18145	0.36	-0.2
1,855,321	+		BBR_RS18145	0.36	+3.1
1,855,329	-		BBR_RS18145	0.37	-1.0
1,855,336	-		BBR_RS18145	0.37	-1.2
1,855,336	-		BBR_RS18145	0.37	+1.5
1,855,336	-		BBR_RS18145	0.37	+0.7
1,855,336	-		BBR_RS18145	0.37	-0.9
1,855,405	+		BBR_RS18145	0.41	+0.6
1,855,431	-		BBR_RS18145	0.43	-1.4
1,855,434	+		BBR_RS18145	0.43	+1.4
1,855,447	-		BBR_RS18145	0.43	+0.1
1,855,447	-		BBR_RS18145	0.43	+1.6
1,855,449	-		BBR_RS18145	0.44	+1.5
1,855,449	-		BBR_RS18145	0.44	+0.6
1,855,449	-		BBR_RS18145	0.44	+0.0
1,855,468	+		BBR_RS18145	0.45	+1.0
1,855,468	+		BBR_RS18145	0.45	-1.6
1,855,468	+		BBR_RS18145	0.45	-4.3
1,855,473	+		BBR_RS18145	0.45	+0.3
1,855,476	-		BBR_RS18145	0.45	+1.1
1,855,484	+		BBR_RS18145	0.45	+1.4
1,855,485	+		BBR_RS18145	0.46	+1.8