Experiment: BG11 with Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nadC and Synpcc7942_0952 are separated by 143 nucleotides Synpcc7942_0952 and Synpcc7942_0953 are separated by 123 nucleotides Synpcc7942_0953 and Synpcc7942_0954 are separated by 57 nucleotides
Synpcc7942_0951: nadC - nicotinate-nucleotide pyrophosphorylase, at 959,837 to 960,685
nadC
Synpcc7942_0952: Synpcc7942_0952 - hypothetical protein, at 960,829 to 961,620
_0952
Synpcc7942_0953: Synpcc7942_0953 - hypothetical protein, at 961,744 to 962,208
_0953
Synpcc7942_0954: Synpcc7942_0954 - glycine cleavage T-protein-like, at 962,266 to 963,300
_0954
Position (kb) 960
961
962 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 959.847 kb on + strand at 959.850 kb on - strand at 959.921 kb on + strand at 959.922 kb on + strand, within nadC at 959.923 kb on - strand, within nadC at 959.930 kb on - strand, within nadC at 960.002 kb on + strand, within nadC at 960.018 kb on + strand, within nadC at 960.094 kb on + strand, within nadC at 960.103 kb on + strand, within nadC at 960.118 kb on + strand, within nadC at 960.126 kb on - strand, within nadC at 960.126 kb on - strand, within nadC at 960.137 kb on + strand, within nadC at 960.146 kb on - strand, within nadC at 960.265 kb on + strand, within nadC at 960.273 kb on - strand, within nadC at 960.309 kb on + strand, within nadC at 960.435 kb on + strand, within nadC at 960.443 kb on - strand, within nadC at 960.687 kb on + strand at 960.687 kb on + strand at 960.695 kb on - strand at 960.695 kb on - strand at 960.707 kb on - strand at 960.707 kb on - strand at 960.717 kb on - strand at 960.727 kb on - strand at 960.735 kb on + strand at 960.735 kb on + strand at 960.737 kb on + strand at 960.743 kb on - strand at 960.752 kb on - strand at 960.767 kb on - strand at 960.802 kb on - strand at 960.818 kb on + strand at 960.818 kb on + strand at 960.826 kb on + strand at 960.826 kb on + strand at 960.834 kb on - strand at 960.891 kb on + strand at 960.892 kb on - strand at 960.895 kb on + strand at 960.905 kb on - strand at 961.003 kb on - strand, within Synpcc7942_0952 at 961.024 kb on - strand, within Synpcc7942_0952 at 961.051 kb on + strand, within Synpcc7942_0952 at 961.093 kb on - strand, within Synpcc7942_0952 at 961.118 kb on + strand, within Synpcc7942_0952 at 961.128 kb on + strand, within Synpcc7942_0952 at 961.149 kb on + strand, within Synpcc7942_0952 at 961.149 kb on + strand, within Synpcc7942_0952 at 961.153 kb on + strand, within Synpcc7942_0952 at 961.157 kb on - strand, within Synpcc7942_0952 at 961.157 kb on - strand, within Synpcc7942_0952 at 961.227 kb on - strand, within Synpcc7942_0952 at 961.237 kb on + strand, within Synpcc7942_0952 at 961.333 kb on + strand, within Synpcc7942_0952 at 961.349 kb on - strand, within Synpcc7942_0952 at 961.367 kb on + strand, within Synpcc7942_0952 at 961.375 kb on - strand, within Synpcc7942_0952 at 961.415 kb on - strand, within Synpcc7942_0952 at 961.447 kb on + strand, within Synpcc7942_0952 at 961.452 kb on + strand, within Synpcc7942_0952 at 961.474 kb on - strand, within Synpcc7942_0952 at 961.484 kb on - strand, within Synpcc7942_0952 at 961.488 kb on + strand at 961.511 kb on - strand, within Synpcc7942_0952 at 961.537 kb on - strand, within Synpcc7942_0952 at 961.564 kb on + strand at 961.564 kb on + strand at 961.564 kb on + strand at 961.566 kb on - strand at 961.567 kb on - strand at 961.572 kb on - strand at 961.572 kb on - strand at 961.574 kb on - strand at 961.594 kb on - strand at 961.594 kb on - strand at 961.594 kb on - strand at 961.601 kb on + strand at 961.715 kb on - strand at 961.789 kb on + strand at 961.801 kb on - strand at 961.816 kb on - strand, within Synpcc7942_0953 at 961.843 kb on - strand, within Synpcc7942_0953 at 961.887 kb on - strand, within Synpcc7942_0953 at 961.951 kb on - strand, within Synpcc7942_0953 at 961.976 kb on + strand, within Synpcc7942_0953 at 961.986 kb on + strand, within Synpcc7942_0953 at 962.000 kb on - strand, within Synpcc7942_0953 at 962.001 kb on + strand, within Synpcc7942_0953 at 962.048 kb on + strand, within Synpcc7942_0953 at 962.048 kb on + strand, within Synpcc7942_0953 at 962.048 kb on + strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.056 kb on - strand, within Synpcc7942_0953 at 962.090 kb on - strand, within Synpcc7942_0953 at 962.092 kb on - strand, within Synpcc7942_0953 at 962.146 kb on - strand, within Synpcc7942_0953 at 962.175 kb on - strand at 962.189 kb on - strand at 962.204 kb on + strand at 962.204 kb on + strand at 962.204 kb on + strand at 962.204 kb on + strand at 962.205 kb on - strand at 962.212 kb on - strand at 962.212 kb on - strand at 962.216 kb on + strand at 962.236 kb on + strand at 962.242 kb on + strand at 962.242 kb on - strand at 962.242 kb on - strand at 962.249 kb on - strand at 962.285 kb on - strand at 962.316 kb on - strand at 962.319 kb on - strand at 962.353 kb on + strand at 962.353 kb on + strand at 962.361 kb on - strand at 962.386 kb on - strand, within Synpcc7942_0954 at 962.386 kb on - strand, within Synpcc7942_0954 at 962.434 kb on + strand, within Synpcc7942_0954 at 962.434 kb on + strand, within Synpcc7942_0954 at 962.442 kb on - strand, within Synpcc7942_0954 at 962.442 kb on - strand, within Synpcc7942_0954 at 962.468 kb on - strand, within Synpcc7942_0954 at 962.500 kb on - strand, within Synpcc7942_0954 at 962.503 kb on + strand, within Synpcc7942_0954 at 962.510 kb on + strand, within Synpcc7942_0954 at 962.510 kb on + strand, within Synpcc7942_0954 at 962.524 kb on + strand, within Synpcc7942_0954 at 962.531 kb on - strand, within Synpcc7942_0954 at 962.539 kb on - strand, within Synpcc7942_0954 at 962.548 kb on - strand, within Synpcc7942_0954 at 962.548 kb on - strand, within Synpcc7942_0954 at 962.572 kb on + strand, within Synpcc7942_0954 at 962.590 kb on + strand, within Synpcc7942_0954 at 962.598 kb on - strand, within Synpcc7942_0954 at 962.599 kb on - strand, within Synpcc7942_0954
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Fusidic 0.5 mg/ml remove 959,847 + -1.9 959,850 - +0.0 959,921 + -1.1 959,922 + nadC Synpcc7942_0951 0.10 -1.4 959,923 - nadC Synpcc7942_0951 0.10 -1.6 959,930 - nadC Synpcc7942_0951 0.11 -1.7 960,002 + nadC Synpcc7942_0951 0.19 -2.5 960,018 + nadC Synpcc7942_0951 0.21 -0.2 960,094 + nadC Synpcc7942_0951 0.30 -2.7 960,103 + nadC Synpcc7942_0951 0.31 -2.7 960,118 + nadC Synpcc7942_0951 0.33 -1.4 960,126 - nadC Synpcc7942_0951 0.34 -1.0 960,126 - nadC Synpcc7942_0951 0.34 +0.0 960,137 + nadC Synpcc7942_0951 0.35 -2.2 960,146 - nadC Synpcc7942_0951 0.36 -3.1 960,265 + nadC Synpcc7942_0951 0.50 -2.4 960,273 - nadC Synpcc7942_0951 0.51 -2.3 960,309 + nadC Synpcc7942_0951 0.56 -1.0 960,435 + nadC Synpcc7942_0951 0.70 -3.0 960,443 - nadC Synpcc7942_0951 0.71 +1.8 960,687 + -0.7 960,687 + -0.1 960,695 - +0.0 960,695 - -0.8 960,707 - -0.7 960,707 - -1.1 960,717 - -0.1 960,727 - +2.3 960,735 + -0.4 960,735 + +0.5 960,737 + -0.1 960,743 - -1.2 960,752 - -1.7 960,767 - -2.1 960,802 - -0.3 960,818 + +1.6 960,818 + -0.6 960,826 + +0.5 960,826 + -0.4 960,834 - +0.1 960,891 + +1.3 960,892 - -1.3 960,895 + +0.2 960,905 - +1.3 961,003 - Synpcc7942_0952 0.22 -0.2 961,024 - Synpcc7942_0952 0.25 -0.9 961,051 + Synpcc7942_0952 0.28 -0.4 961,093 - Synpcc7942_0952 0.33 +0.8 961,118 + Synpcc7942_0952 0.36 -0.3 961,128 + Synpcc7942_0952 0.38 +0.5 961,149 + Synpcc7942_0952 0.40 +1.2 961,149 + Synpcc7942_0952 0.40 -0.2 961,153 + Synpcc7942_0952 0.41 -1.9 961,157 - Synpcc7942_0952 0.41 -0.1 961,157 - Synpcc7942_0952 0.41 -1.7 961,227 - Synpcc7942_0952 0.50 -0.2 961,237 + Synpcc7942_0952 0.52 -2.3 961,333 + Synpcc7942_0952 0.64 -0.2 961,349 - Synpcc7942_0952 0.66 -0.3 961,367 + Synpcc7942_0952 0.68 -0.2 961,375 - Synpcc7942_0952 0.69 -1.1 961,415 - Synpcc7942_0952 0.74 -0.3 961,447 + Synpcc7942_0952 0.78 -0.3 961,452 + Synpcc7942_0952 0.79 -1.4 961,474 - Synpcc7942_0952 0.81 +0.6 961,484 - Synpcc7942_0952 0.83 -0.1 961,488 + +0.8 961,511 - Synpcc7942_0952 0.86 +0.2 961,537 - Synpcc7942_0952 0.89 -1.1 961,564 + +0.4 961,564 + -0.2 961,564 + +1.3 961,566 - -0.6 961,567 - -1.0 961,572 - +0.3 961,572 - -1.0 961,574 - -0.2 961,594 - +2.1 961,594 - -0.7 961,594 - -0.7 961,601 + -0.5 961,715 - -0.8 961,789 + -0.7 961,801 - +0.0 961,816 - Synpcc7942_0953 0.15 -1.7 961,843 - Synpcc7942_0953 0.21 +0.2 961,887 - Synpcc7942_0953 0.31 +0.2 961,951 - Synpcc7942_0953 0.45 +1.0 961,976 + Synpcc7942_0953 0.50 -0.5 961,986 + Synpcc7942_0953 0.52 -0.1 962,000 - Synpcc7942_0953 0.55 -0.6 962,001 + Synpcc7942_0953 0.55 +0.8 962,048 + Synpcc7942_0953 0.65 +0.3 962,048 + Synpcc7942_0953 0.65 -0.3 962,048 + Synpcc7942_0953 0.65 +0.2 962,056 - Synpcc7942_0953 0.67 +0.2 962,056 - Synpcc7942_0953 0.67 -1.1 962,056 - Synpcc7942_0953 0.67 -0.7 962,056 - Synpcc7942_0953 0.67 -0.1 962,056 - Synpcc7942_0953 0.67 +0.8 962,056 - Synpcc7942_0953 0.67 +0.4 962,090 - Synpcc7942_0953 0.74 +0.5 962,092 - Synpcc7942_0953 0.75 -0.6 962,146 - Synpcc7942_0953 0.86 -2.4 962,175 - +0.8 962,189 - -0.3 962,204 + -0.5 962,204 + -1.0 962,204 + +1.8 962,204 + -0.3 962,205 - +1.1 962,212 - -1.0 962,212 - +0.3 962,216 + -0.3 962,236 + +2.3 962,242 + -1.2 962,242 - -0.8 962,242 - +0.6 962,249 - +1.9 962,285 - +1.3 962,316 - -0.4 962,319 - +1.9 962,353 + +0.5 962,353 + +0.1 962,361 - +0.4 962,386 - Synpcc7942_0954 0.12 +0.9 962,386 - Synpcc7942_0954 0.12 -0.2 962,434 + Synpcc7942_0954 0.16 +0.6 962,434 + Synpcc7942_0954 0.16 -1.4 962,442 - Synpcc7942_0954 0.17 +0.8 962,442 - Synpcc7942_0954 0.17 +1.3 962,468 - Synpcc7942_0954 0.20 +0.5 962,500 - Synpcc7942_0954 0.23 -0.3 962,503 + Synpcc7942_0954 0.23 +0.3 962,510 + Synpcc7942_0954 0.24 +0.8 962,510 + Synpcc7942_0954 0.24 -1.2 962,524 + Synpcc7942_0954 0.25 +0.5 962,531 - Synpcc7942_0954 0.26 +0.5 962,539 - Synpcc7942_0954 0.26 +1.3 962,548 - Synpcc7942_0954 0.27 +0.3 962,548 - Synpcc7942_0954 0.27 -0.1 962,572 + Synpcc7942_0954 0.30 +0.5 962,590 + Synpcc7942_0954 0.31 +0.1 962,598 - Synpcc7942_0954 0.32 -1.0 962,599 - Synpcc7942_0954 0.32 -0.0
Or see this region's nucleotide sequence